1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgaaatgtgatattgattcagaagtctgaggctcttgtctttgttgctttagagaccgattcctcttgttttaggtttcaaaagacaattgagaaaagtttggctggtgcctacagctgtgtagaactgttccacttggcactagtgttctcttcctgtatgacactcatttcttacgtaatgtctaatgcagGTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTGATAAATCTTTGAAAGAGCACATGACTGCTAGACCAGACTTGGCTGATCT
species | Physcomitrella patens |
transcript | PP1S47_179V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGAAAGGGCCAGCGTTGAGAGAAGGGGAGGCATGGTTACCCAAATTCCTG GTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTGEST: gi|162153642|gb|FC329671.1|FC329671
genomic: CGAAAGGGCCAGCGTTGAGAGAAGGGGAGGCATGGTTACCCAAATTCCTGgtatgaaatg ... tctaatgcagGTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTG
EST: CGAAAGGGCCAGCGTTGAGAGAAGGGGAGGCATGGTTACCCAAATTCCTG GTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTGEST: gi|208345948|gb|DC921105.1|DC921105
genomic: CGAAAGGGCCAGCGTTGAGAGAAGGGGAGGCATGGTTACCCAAATTCCTGgtatgaaatg ... tctaatgcagGTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTG
EST: CGAAAGGGCCAGCGTTGAGAGAAGGGGAGGCATGGTTACCCAAATTCCTG GTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTG
genomic: CGAAAGGGCCAGCGTTGAGAGAAGGGGAGGCATGGTTACCCAAATTCCTGgtatgaaatg ... tctaatgcagGTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTG
gcactagtgttctcttcctgtatgacactcatttcttacgtaatgtctaatgcagGTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTGATAAATCTTTGAAAGAGCACATGACTGCTAGACCAGACTTGGCTGATCT
atttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaaatgtgatattgattcagaagtctgaggctcttgtctttgttgctttagagaccgattcctcttgttttaggtttcaaaagacaattgagaaaagtttggctggtgcctacagctgtgtagaactgttccacttggcactagtgttctcttcctgtatgacactcatttcttacgtaatgtctaatgcagGTGATCATTGGAGAGTGGATGGGTTAGTATCTGTTGCGAGAGCGTTTGGTGATAAATCTTTGAAAGAGCACATGACTGCTAGACCAGACTTGGCTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT