1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttattataactcatcattgtcccgaactgaaacttaacggcgtgtgcgatgttctcagtcctccattataatcgtttttgtgtgcacatttttgttatggtggtcagaccgaggattgtgttctctgtttatgatcagggcaagtagcttagtttatatgactttaagtaacatatgattttaaaaaatggttgcagGGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAGGGAGAGGCCAAGAAGGCTTTAAGGGAGGTGATTGAAGAATACAATTTGA
species | Physcomitrella patens |
transcript | PP1S47_171V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGATCGTGCCATTCGAGTTCCAGAGCTACTTGGGGTGGCACAAGCAG GGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAGEST: gi|67569839|gb|BJ942663.1|BJ942663
genomic: AAGAGATCGTGCCATTCGAGTTCCAGAGCTACTTGGGGTGGCACAAGCAGgttattataa ... atggttgcagGGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAG
EST: AAGAGATCGTGCCATTCGAGTTCCAGAGCTACTTGGGGTGGCACAAGCAG GGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAGEST: gi|162165567|gb|FC341406.1|FC341406
genomic: AAGAGATCGTGCCATTCGAGTTCCAGAGCTACTTGGGGTGGCACAAGCAGgttattataa ... atggttgcagGGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAG
EST: AAGAGATCGTGCCATTCGAGTTCCAGAGCTACTTGGGGTGGCACAAGCAG GGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAGEST: gi|162196655|gb|FC373801.1|FC373801
genomic: AAGAGATCGTGCCATTCGAGTTCCAGAGCTACTTGGGGTGGCACAAGCAGgttattataa ... atggttgcagGGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAG
EST: AAGAGATCGTGCCATTC-AGTTCCAGAGCTACTTGGGGTGGCACAAGCAG GGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAG
genomic: AAGAGATCGTGCCATTCGAGTTCCAGAGCTACTTGGGGTGGCACAAGCAGgttattataa ... atggttgcagGGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAG
agtagcttagtttatatgactttaagtaacatatgattttaaaaaatggttgcagGGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAGGGAGAGGCCAAGAAGGCTTTAAGGGAGGTGATTGAAGAATACAATTTGA
aagtaac putative branch site (score: 2)
tttatatgactttaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattataactcatcattgtcccgaactgaaacttaacggcgtgtgcgatgttctcagtcctccattataatcgtttttgtgtgcacatttttgttatggtggtcagaccgaggattgtgttctctgtttatgatcagggcaagtagcttagtttatatgactttaagtaacatatgattttaaaaaatggttgcagGGAGATGGGCTTCTGTTTTATGGCCTGCACGTGGAGAATGGTCGTATAAAGGGAGAGGCCAAGAAGGCTTTAAGGGAGGTGATTGAAGAATACAATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA