1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctgcccgtgcagagaaggggaaggggggttgtgtgtgggaaatagaggatagtttctggatctaagttaaaatgttactttggtgtgttttcactacagGTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATGTGTTCAAAAGCACGTGAAAATATACAGGAGATAGCACATTTGCAACAAC
species | Physcomitrella patens |
transcript | PP1S47_118V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCCCGCCACTTTCATTAGTGCAGCCTCTCTGTTCTGCATCGAGGAG GTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATGEST: gi|37841697|gb|BJ599705.1|BJ599705
genomic: TTGTTCCCGCCACTTTCATTAGTGCAGCCTCTCTGTTCTGCATCGAGGAGgtgagacaca ... ttcactacagGTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATG
EST: TTGTTCCCGCCACTTTCATTAGTGCAGCCTCTCTGTTCTGCATCGAGGAG GTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATGEST: gi|162230688|gb|FC406111.1|FC406111
genomic: TTGTTCCCGCCACTTTCATTAGTGCAGCCTCTCTGTTCTGCATCGAGGAGgtgagacaca ... ttcactacagGTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATG
EST: TTGTTCCCGCCACTTTCATTAGTGCAGCCTCTCTGTTCTGCATCGAGGAG GTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATGEST: gi|162230689|gb|FC406112.1|FC406112
genomic: TTGTTCCCGCCACTTTCATTAGTGCAGCCTCTCTGTTCTGCATCGAGGAGgtgagacaca ... ttcactacagGTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATG
EST: TTGTTCCCGCCACTTTCATTAGTGCAGCCTCTCTGTTCTGCATCGAGGAG GTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATG
genomic: TTGTTCCCGCCACTTTCATTAGTGCAGCCTCTCTGTTCTGCATCGAGGAGgtgagacaca ... ttcactacagGTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATG
gaggatagtttctggatctaagttaaaatgttactttggtgtgttttcactacagGTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATGTGTTCAAAAGCACGTGAAAATATACAGGAGATAGCACATTTGCAACAAC
ttttcact CT-rich tract
taagttaaaatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgcccgtgcagagaaggggaaggggggttgtgtgtgggaaatagaggatagtttctggatctaagttaaaatgttactttggtgtgttttcactacagGTTGGGGTCCTCATTGAGGAGCCATTTCCAATCCTTGCATTGGACCGAATGTGTTCAAAAGCACGTGAAAATATACAGGAGATAGCACATTTGCAACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT