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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattactttccgtgctgttagtccgttatccatgacctaaaacgacaaaacacaagtttatttgggaagtacaggcatctaaatgaaaatacctttattgacgtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAACGAAGAAGCTCCAAGACATCTTGCCTAGTATCATCAACCAGTTAGGACC

Basic information

species Physcomitrella patens
transcript PP1S479_10V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S479_10V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os03g63400.1 (Oryza sativa), 3'ss of exon 3
gtattactttccgtgctgttagtccgttatccatgacctaaaacgacaaaacacaagtttatttgggaagtacaggcatctaaatgaaaatacctttattgacgtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAACGAAGAAGCTCCAAGACATCTTGCCTAGTATCATCAACCAGTTAGGACC
|||| |   ||| | |||||      ||  | |    |   | |    |||  | |  |  ||   |  ||      |  ||         |  ||   |      |||||||||||||| ||||| ||||| ||||| |||||||| || ||  |  | || || ||||                                           
gtataagcatccctcctgtt------ttgccta----ccgtaccatggaaatgccaactgcttcttggtgttagattacttatcc------atgttcgatccgacctgtgcagTGCAAGCTTCCATCGCCGCAAACACATGGGTGGTCAGTGGCTCCCCACAGACCAAGA-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67571898|gb|BJ944722.1|BJ944722
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162274367|gb|FC450394.1|FC450394
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162244329|gb|FC421007.1|FC421007
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18342856|gb|BJ174892.1|BJ174892
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18353276|gb|BJ185331.1|BJ185331
EST:     GGTCAACATTTTTCANGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162240484|gb|FC414373.1|FC414373
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162224828|gb|FC400828.1|FC400828
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18337154|gb|BJ169178.1|BJ169178
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162279458|gb|FC455574.1|FC455574
EST:     GGTCAACATTTTTCAGGAGGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162224827|gb|FC400827.1|FC400827
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|37833743|gb|BJ591755.1|BJ591755
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|15320070|gb|BI487598.1|BI487598
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18328912|gb|BJ160918.1|BJ160918
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162229541|gb|FC405875.1|FC405875
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|37837361|gb|BJ595369.1|BJ595369
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162253118|gb|FC428950.1|FC428950
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162258644|gb|FC434339.1|FC434339
EST:     GTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162222146|gb|FC397374.1|FC397374
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|67507846|gb|BJ940722.1|BJ940722
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18328944|gb|BJ160950.1|BJ160950
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|67575474|gb|BJ948298.1|BJ948298
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCC
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCC
EST: gi|67698944|gb|BJ959177.1|BJ959177
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162235488|gb|FC411311.1|FC411311
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162235489|gb|FC411312.1|FC411312
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|67576767|gb|BJ949591.1|BJ949591
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162244328|gb|FC421006.1|FC421006
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162222147|gb|FC397375.1|FC397375
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162202990|gb|FC380375.1|FC380375
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|67579122|gb|BJ951273.1|BJ951273
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18356803|gb|BJ188862.1|BJ188862
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18337124|gb|BJ169148.1|BJ169148
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162222208|gb|FC397644.1|FC397644
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18357996|gb|BJ190055.1|BJ190055
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|67695264|gb|BJ955497.1|BJ955497
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162227817|gb|FC403967.1|FC403967
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162274368|gb|FC450395.1|FC450395
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|37834740|gb|BJ592752.1|BJ592752
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162239783|gb|FC417182.1|FC417182
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162274496|gb|FC450731.1|FC450731
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|67699627|gb|BJ959860.1|BJ959860
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|67576136|gb|BJ948960.1|BJ948960
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162279459|gb|FC455575.1|FC455575
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162241574|gb|FC414696.1|FC414696
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGAGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162233975|gb|FC410293.1|FC410293
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|18353616|gb|BJ185671.1|BJ185671
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162222207|gb|FC397643.1|FC397643
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162276792|gb|FC452786.1|FC452786
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162159448|gb|FC336237.1|FC336237
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|37835358|gb|BJ593370.1|BJ593370
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|7583810|gb|AW699714.1|AW699714
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|37822000|gb|BJ580066.1|BJ580066
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162249854|gb|FC427618.1|FC427618
EST:     TGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: TGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162279226|gb|FC455773.1|FC455773
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|37835088|gb|BJ593100.1|BJ593100
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162229542|gb|FC405876.1|FC405876
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162203658|gb|FC379144.1|FC379144
EST:     GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: GGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
EST: gi|162267093|gb|FC443324.1|FC443324
EST:     CGTGAATCCGAAAG                         TGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA
genomic: CGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 52

CAGAGCACCTTGAAACGACTTGGAGTGAATACCGTTCCTGGAATTGAGGAGGTCAACATTTTTCAGGATGAGTCTGTTATCCATTTCGTGAATCCGAAAGgtattacttt ... gtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAACGAAGAAGCTCCAAGACATCTTGCCTAGTATCATCAACCAGTTAGGACC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgggaagtacaggcatctaaatgaaaatacctttattgacgtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAACGAAGAAGCTCCAAGACATCTTGCCTAGTATCATCAACCAGTTAGGACC
                                      tattgac  putative branch site (score: 52)
                   atctaaatgaaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattactttccgtgctgttagtccgttatccatgacctaaaacgacaaaacacaagtttatttgggaagtacaggcatctaaatgaaaatacctttattgacgtgtgtgcagTGCAAGCCTCCATTGCCGCCAACACGTGGGTGGTGAGCGGACCTTCTCAAACGAAGAAGCTCCAAGACATCTTGCCTAGTATCATCAACCAGTTAGGACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC