1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgattctaaaaaaagttccattttatttttattcccgacattgtgcttctctccactttactgttgtgaacaaaatacgcttacgtagatcttcgttgattcgaaacctaaatatttatttggcttcaaccccctctcgtgtgctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAACAGTTTGGACAAGAG
species | Physcomitrella patens |
transcript | PP1S477_4V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAACEST: gi|162209672|gb|FC386171.1|FC386171
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAACEST: gi|162209671|gb|FC386170.1|FC386170
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAACEST: gi|67692786|gb|BJ953019.1|BJ953019
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAACEST: gi|208397376|gb|DC916330.1|DC916330
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAACEST: gi|208354215|gb|DC902457.1|DC902457
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
EST: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAG GAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
genomic: GAGGTTTGCAGTAAGATCTTCTAAAGCTATCGAGGAAATGGCTCAAAAAGgtgattctaa ... ctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAAC
attcgaaacctaaatatttatttggcttcaaccccctctcgtgtgctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAACAGTTTGGACAAGAG
acctaaa putative branch site (score: 3)
ctctgttc putative PPT
aaacctaaatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattctaaaaaaagttccattttatttttattcccgacattgtgcttctctccactttactgttgtgaacaaaatacgcttacgtagatcttcgttgattcgaaacctaaatatttatttggcttcaaccccctctcgtgtgctctgttcagGAGTTCAAACAAAGGAGGAGCTGACGAAACAGCTAAAGAGTTACTCGGAACAGTTTGGACAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA