1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgaggcctctacccgttgtttcttgagttaacatatatcgattgtaacgctcctgtgtgcgttttccctttttcaaatcttttgaagatacatattgggacatctaatgagcaaatcgggtgttgtgtgcagGTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGATAGAGCTTGACATGGCAAGCGCCCAAGGTGATAATTATTTTGAAGACAA
species | Physcomitrella patens |
transcript | PP1S475_6V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAACACTGTTGAGATCAATGGTGCTGACAGAAACGAGATTGGCATGGTG GTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGAEST: gi|67696264|gb|BJ956497.1|BJ956497
genomic: ATAACACTGTTGAGATCAATGGTGCTGACAGAAACGAGATTGGCATGGTGgtgaggcctc ... ttgtgtgcagGTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGA
EST: AGATCAATGGTGCTGACAGAAACGAGATTGGCATGGTG GTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGAEST: gi|67692732|gb|BJ952965.1|BJ952965
genomic: AGATCAATGGTGCTGACAGAAACGAGATTGGCATGGTGgtgaggcctc ... ttgtgtgcagGTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGA
EST: ATAACACTGTTGAGATCAATGGTGCTGACAGAAACGAGATTGGCATGGTG GTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGA
genomic: ATAACACTGTTGAGATCAATGGTGCTGACAGAAACGAGATTGGCATGGTGgtgaggcctc ... ttgtgtgcagGTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGA
tcttttgaagatacatattgggacatctaatgagcaaatcgggtgttgtgtgcagGTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGATAGAGCTTGACATGGCAAGCGCCCAAGGTGATAATTATTTTGAAGACAA
atctaat putative branch site (score: 3)
atacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcctctacccgttgtttcttgagttaacatatatcgattgtaacgctcctgtgtgcgttttccctttttcaaatcttttgaagatacatattgggacatctaatgagcaaatcgggtgttgtgtgcagGTTATTCGTGGGAACAGCGTAGTCATGATCGAGGCACTAGAAGCTGTAAGATAGAGCTTGACATGGCAAGCGCCCAAGGTGATAATTATTTTGAAGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA