1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacttggtttgtattgtgtaaggtattgaggttttaggtacagttattagctgaggttcgcgatactatcgatttagaaaatcattgtttggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATTGGACTTGGCGAGGTGGTGGGTCGGCTTTGGAG
species | Physcomitrella patens |
transcript | PP1S475_2V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATEST: gi|162269854|gb|FC445384.1|FC445384
genomic: TAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
EST: GAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATEST: gi|67579037|gb|BJ951188.1|BJ951188
genomic: GAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
EST: TCTGGAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATEST: gi|67572167|gb|BJ944991.1|BJ944991
genomic: TCTGGAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
EST: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATEST: gi|162269855|gb|FC445385.1|FC445385
genomic: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
EST: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATEST: gi|162276055|gb|FC452331.1|FC452331
genomic: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
EST: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATEST: gi|162222735|gb|FC398989.1|FC398989
genomic: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
EST: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATEST: gi|162222734|gb|FC398988.1|FC398988
genomic: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
EST: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCNTGATGATGTCCCAGAGATAATGGAGAAGCACATEST: gi|162235337|gb|FC412304.1|FC412304
genomic: GTGATTGTGTTTAGACCTGATGGAGGTTCTGGAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
EST: GGAGGTTGCTCGGGTCATTG GTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
genomic: GGAGGTTGCTCGGGTCATTGgtgagttttt ... ggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACAT
attagctgaggttcgcgatactatcgatttagaaaatcattgtttggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATTGGACTTGGCGAGGTGGTGGGTCGGCTTTGGAG
atttagaaaatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttggtttgtattgtgtaaggtattgaggttttaggtacagttattagctgaggttcgcgatactatcgatttagaaaatcattgtttggggtttcagGTACGGGTACGTCACTCCTGATGATGTCCCAGAGATAATGGAGAAGCACATTGGACTTGGCGAGGTGGTGGGTCGGCTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG