1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgactgtgctctcacttagtattgtattttgaacgacaatagagaattttcttgttctaatgtgatttttggcattttcttttactgcgcgaatcaaaacggattcgagggtttatcatgcgattgtatgaattcacgatcgtggtgtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAG
species | Physcomitrella patens |
transcript | PP1S475_17V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAG GGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGAEST: gi|162263797|gb|FC439662.1|FC439662
genomic: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgt ... gtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
EST: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAG GGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGAEST: gi|208345867|gb|DC921066.1|DC921066
genomic: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgt ... gtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
EST: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAG GGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGAEST: gi|100386063|gb|BY970002.1|BY970002
genomic: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgt ... gtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGA
EST: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAG GGCCCGATGG-TATTGTAATTGCATTTTCAGTTGCAGCTC
genomic: CCACACCGCAGTACCGGCTGGCCATCCTTTGCACAGCGTCAAATTGCCAGgtatgactgt ... gtgtttgtagGGCC-GATGGGTATTGTAATTGCATTTTCAGTTGCAGCTC
gattcgagggtttatcatgcgattgtatgaattcacgatcgtggtgtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAG
tttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgactgtgctctcacttagtattgtattttgaacgacaatagagaattttcttgttctaatgtgatttttggcattttcttttactgcgcgaatcaaaacggattcgagggtttatcatgcgattgtatgaattcacgatcgtggtgtgtttgtagGGCCGATGGGTATTGTAATTGCATTTTCAGTTGCAGCTCTTGGATTGAAGACTGCTGTGAAGAATCAAGGCTTTATGCCTGGCACTCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA