1 5' 3' | 2 5' 3' | 3 5' 3' |
...agaagtgcctctctactccaggatgtggttcagctgaccatttcaaactcgtaattcaagatgttcctgacaagtaaaaatcgatggtgggttgcaacagGGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAGCCTAATCCCGAAATTTTTAAGATTGCATTGTCGAGAGCTGGGGACAACA
species | Physcomitrella patens |
transcript | PP1S474_4V6.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCTTACAGATATCGCGATGACATCCTACCACAATTAGGACTTCGCCAG GGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAGEST: gi|162193253|gb|FC369974.1|FC369974
genomic: CATCTTACAGATATCGCGATGACATCCTACCACAATTAGGACTTCGCCAGgtcagattcc ... gttgcaacagGGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAG
EST: CATCTTACAGATATCGCGATGACATCCTACCACAATTAGGACTTCGCCAG GGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAGEST: gi|162275769|gb|FC451940.1|FC451940
genomic: CATCTTACAGATATCGCGATGACATCCTACCACAATTAGGACTTCGCCAGgtcagattcc ... gttgcaacagGGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAG
EST: CATCTTACAGATATCGCGATGACATCCTACCACAATTAGGACTTCGCCAG GGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAGEST: gi|208360936|gb|DC954106.1|DC954106
genomic: CATCTTACAGATATCGCGATGACATCCTACCACAATTAGGACTTCGCCAGgtcagattcc ... gttgcaacagGGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAG
EST: CATCTTACAGATATCGCGATGACATCCTACCACAATTAGGACTTCGCCAG GGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAGEST: gi|37840079|gb|BJ598087.1|BJ598087
genomic: CATCTTACAGATATCGCGATGACATCCTACCACAATTAGGACTTCGCCAGgtcagattcc ... gttgcaacagGGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAG
EST: ACCACAATTAGGACTTCGCCAGG GGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAA
genomic: ACCACAATTAGGACTTCGCCA-Ggtcagattcc ... gttgcaacagGGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAA
aactcgtaattcaagatgttcctgacaagtaaaaatcgatggtgggttgcaacagGGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAGCCTAATCCCGAAATTTTTAAGATTGCATTGTCGAGAGCTGGGGACAACA
tcctgac putative branch site (score: 2)
aagtaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagtgcctctctactccaggatgtggttcagctgaccatttcaaactcgtaattcaagatgttcctgacaagtaaaaatcgatggtgggttgcaacagGGAGAAGAGTGGGACTTTGGTGTTTTTTCTGGTATTGAAGGCGTTGAGAAGCCTAATCCCGAAATTTTTAAGATTGCATTGTCGAGAGCTGGGGACAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT