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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaattgaagtgagttgtgattggatttgtttctttgaccaaagttttctcaagtaaactgccacaatatttcatttttgggtgtcacaaacccgttatgctagttaccatcatgatttgcgtctagctaatgtcatcggtcgttgtttaatagTATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAA

Basic information

species Physcomitrella patens
transcript PP1S473_1V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256900|gb|FC433002.1|FC433002
EST:     TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAG                         TATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATC
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tgtttaatagTATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATC
EST: gi|162256899|gb|FC433001.1|FC433001
EST:     TTCCTCTGCCTTGACCGACATNTTCATCGCCTCAGTCCTGGTCACTGAAG                         TATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATC
genomic: TTCCTCTGCCTTGACCGACATTTTCATCGCCTCAGTCCTGGTCACTGAAGgtgagcaatt ... tgtttaatagTATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctagttaccatcatgatttgcgtctagctaatgtcatcggtcgttgtttaatagTATTTGGCTTGTCAAGTACAGATGAGGACCTTTGGAACTTGGAGATGTATCCGCCGGAGGCTATGGCTACCAGCAATGACTTTGTATCGAATATACTTAA
                          agctaat  putative branch site (score: 3)
                                            ttgtttaata  TA-rich tract