1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcgtcatacctcattgatcacctgtagtttacatttttttaccaactttttattacatttatttcactgaggtgtggataattcagattattattattatttaaaaaaaaactgttaatgcaattaacaccatttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACCAAGTCTCTTTGGGAGTACGCTGGAGGAGCAAGCAATTGTCGATCAGTG
species | Physcomitrella patens |
transcript | PP1S46_325V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGGTGACTTTCATCTGTATG AATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACEST: gi|37828943|gb|BJ586955.1|BJ586955
genomic: TGTGGTGACTTTCATCTGTATGgtgcgtcata ... ttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
EST: AACAAGTTNCCAGTGTTCGAGTGTGGTGACTTTCATCTGTATG AATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACEST: gi|208365936|gb|DC955483.1|DC955483
genomic: AACAAGTT-CCAGTGTTCGAGTGTGGTGACTTTCATCTGTATGgtgcgtcata ... ttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
EST: TGTGGTGACTTTCATCTGTATG AATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACEST: gi|37836448|gb|BJ594456.1|BJ594456
genomic: TGTGGTGACTTTCATCTGTATGgtgcgtcata ... ttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
EST: TTCCAGTGTTCGAGTGTGGTGACTTTCATCTGTATG AATCCCGAGCTATAGTGCGTTACATAGCCNGGAAATACAAAGGCCAGGGACEST: gi|37833115|gb|BJ591127.1|BJ591127
genomic: TTCCAGTGTTCGAGTGTGGTGACTTTCATCTGTATGgtgcgtcata ... ttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
EST: GCCTTTTAAACAAGTTCCAGTGTTCGAGTGTGGTGACTTTCATCT-TATG AATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACEST: gi|208378933|gb|DC922779.1|DC922779
genomic: GCCTTTTAAACAAGTTCCAGTGTTCGAGTGTGGTGACTTTCATCTGTATGgtgcgtcata ... ttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
EST: GACTTTCATCTGTATG -ATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACEST: gi|208380990|gb|DC919872.1|DC919872
genomic: GACTTTCATCTGTATGgtgcgtcata ... ttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
EST: TCCAGTGTTCGAGTGTGGTGACTTTCATCTGTATG AATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACEST: gi|208363225|gb|DC954383.1|DC954383
genomic: TCCAGTGTTCGAGTGTGGTGACTTTCATCTGTATGgtgcgtcata ... ttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
EST: GCCTTTTAAACAAGTTCCAGTGTTCGAGTGTGGTGACTTTCATCTGTATG AATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
genomic: GCCTTTTAAACAAGTTCCAGTGTTCGAGTGTGGTGACTTTCATCTGTATGgtgcgtcata ... ttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGAC
tattattattatttaaaaaaaaactgttaatgcaattaacaccatttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACCAAGTCTCTTTGGGAGTACGCTGGAGGAGCAAGCAATTGTCGATCAGTG
aattaac putative branch site (score: 2)
ttattatttaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtcatacctcattgatcacctgtagtttacatttttttaccaactttttattacatttatttcactgaggtgtggataattcagattattattattatttaaaaaaaaactgttaatgcaattaacaccatttgtgcgcagAATCCCGAGCTATAGTGCGTTACATAGCCCGGAAATACAAAGGCCAGGGACCAAGTCTCTTTGGGAGTACGCTGGAGGAGCAAGCAATTGTCGATCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA