1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcttaaggtttcttttcttttcttttctatttctctttataaaaatgcttttaggtatgttttaccttttttctgtaacataattcttgtggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCCAAAGTGTGAAAGGAAAGGTTGTGATCGATGCTTTTCGATTGATCAACC
species | Physcomitrella patens |
transcript | PP1S46_324V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|67692976|gb|BJ953209.1|BJ953209
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208388020|gb|DC933140.1|DC933140
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCANCAN AGTTTTGAAGCTTTGAATCAAAGGGCGGTANCANTANTANTGGATCCAATCEST: gi|162224586|gb|FC400482.1|FC400482
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: CGTGGATATCAATACTCAGCAG AGTTTTGAAGCTNTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208384664|gb|DC915239.1|DC915239
genomic: CGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|162173753|gb|FC349929.1|FC349929
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGGTAGCAGTAATAGTGGATCCAATEST: gi|208390625|gb|DC937557.1|DC937557
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGG-TAGCAGTAGTAGTGGATCCAAT
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208378926|gb|DC922772.1|DC922772
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208400245|gb|DC908906.1|DC908906
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|162224587|gb|FC400483.1|FC400483
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: GGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208378125|gb|DC902598.1|DC902598
genomic: GGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|22131888|gb|BQ826859.1|BQ826859
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208395571|gb|DC928986.1|DC928986
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208368927|gb|DC947485.1|DC947485
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|18329512|gb|BJ161518.1|BJ161518
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAEST: gi|208362822|gb|DC950622.1|DC950622
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCA
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|162150910|gb|FC327390.1|FC327390
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|67696853|gb|BJ957086.1|BJ957086
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|67569711|gb|BJ942535.1|BJ942535
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208387484|gb|DC933347.1|DC933347
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208369314|gb|DC955859.1|DC955859
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|100420708|gb|BY993475.1|BY993475
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|162150909|gb|FC327389.1|FC327389
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|18335934|gb|BJ167955.1|BJ167955
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCEST: gi|208364180|gb|DC947284.1|DC947284
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
EST: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAG AGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
genomic: ATCCAGGTTTTGGTTGCTGGTTGTCTGGCGTGGATATCAATACTCAGCAGgtaatttagg ... ggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATC
tgcttttaggtatgttttaccttttttctgtaacataattcttgtggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCCAAAGTGTGAAAGGAAAGGTTGTGATCGATGCTTTTCGATTGATCAACC
ctgtaac putative branch site (score: 7)
taacataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttaaggtttcttttcttttcttttctatttctctttataaaaatgcttttaggtatgttttaccttttttctgtaacataattcttgtggatatgcagAGTTTTGAAGCTTTGAATCAAAGGGCGGTAGCAGTAGTAGTGGATCCAATCCAAAGTGTGAAAGGAAAGGTTGTGATCGATGCTTTTCGATTGATCAACC
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