Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagatttggagcctaatagttttgtgttaatagtgattttcctttctgtcatctgacttggaaatcttacaccaaagccaccttgttttgtgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTGTAGCCATTGAAAAGGTTTTTGACCGTCACAATTAGTTCGCTTACATGAC

Basic information

species Physcomitrella patens
transcript PP1S46_248V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161981700|gb|EE296066.1|EE296066
EST:     TGTCAGCAAGGG                         CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCNTTCTCTG
genomic: TGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: gi|162249473|gb|FC426743.1|FC426743
EST:     AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG                         CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: gi|67508684|gb|BJ941545.1|BJ941545
EST:     AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG                         CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: gi|67578233|gb|BJ950400.1|BJ950400
EST:     AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG                         CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: gi|67699765|gb|BJ959998.1|BJ959998
EST:     AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG                         CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: gi|67701100|gb|BJ961333.1|BJ961333
EST:     AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG                         CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: gi|67691910|gb|BJ952143.1|BJ952143
EST:     AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG                         CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
EST: gi|67578497|gb|BJ950664.1|BJ950664
EST:     AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGG                         CTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG
genomic: AAATACAGTATTAGCTGGGTGTGCGACTGGAGGGAGCATGTCAGCAAGGGgttcgtgttt ... tgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtcatctgacttggaaatcttacaccaaagccaccttgttttgtgtattgcagCTGGACCACAGGCAGCCTGTATTGGATGTGCAGGCTTTGCAGCCTTCTCTGTAGCCATTGAAAAGGTTTTTGACCGTCACAATTAGTTCGCTTACATGAC
                  atcttac  putative branch site (score: 3)
                aaatctta  TA-rich tract