1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtttttttgcagtcttattgaaagtttctttttagatatatgctttttggaatcatgaatgtttgtttttatgaatttatgtatggggataaacttgggtcatgcagactgatcgtcttttactcatacacgatttgaagcgtagtctcgtagcactggataacccgtttcatgctctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAATAAGGGTCGTTTTACCCTTCACCACATCAGTGCTGAAGAAGCCAAG
species | Physcomitrella patens |
transcript | PP1S461_1V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162259879|gb|FC436014.1|FC436014
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|37835287|gb|BJ593299.1|BJ593299
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|22492080|gb|BU052003.1|BU052003
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|67569698|gb|BJ942522.1|BJ942522
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|18340542|gb|BJ172570.1|BJ172570
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|18353813|gb|BJ185868.1|BJ185868
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|19784127|gb|BQ040125.1|BQ040125
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162228343|gb|FC405215.1|FC405215
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|37843912|gb|BJ601920.1|BJ601920
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|67692707|gb|BJ952940.1|BJ952940
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|208350851|gb|DC925940.1|DC925940
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162259878|gb|FC436013.1|FC436013
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|18351557|gb|BJ183609.1|BJ183609
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162271079|gb|FC446613.1|FC446613
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|208397549|gb|DC912167.1|DC912167
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|67696750|gb|BJ956983.1|BJ956983
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162228344|gb|FC405216.1|FC405216
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162204462|gb|FC381690.1|FC381690
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162231579|gb|FC408211.1|FC408211
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|37832657|gb|BJ590669.1|BJ590669
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TGACAAATGCTACCNTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|19783246|gb|BQ039983.1|BQ039983
genomic: TGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162234371|gb|FC410117.1|FC410117
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162231565|gb|FC408210.1|FC408210
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|67692963|gb|BJ953196.1|BJ953196
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|18331744|gb|BJ163755.1|BJ163755
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|67700004|gb|BJ960237.1|BJ960237
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|67573367|gb|BJ946191.1|BJ946191
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162204461|gb|FC381689.1|FC381689
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|67569443|gb|BJ942267.1|BJ942267
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|18355712|gb|BJ187771.1|BJ187771
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|18332043|gb|BJ164055.1|BJ164055
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162271080|gb|FC446614.1|FC446614
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|18357974|gb|BJ190033.1|BJ190033
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162211721|gb|FC388009.1|FC388009
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAEST: gi|162211720|gb|FC388008.1|FC388008
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
EST: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGG ATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
genomic: TATTGATGGCAAGGTCCGCACTGACAAATGCTACCCTGCAGGTTTCATGGgtaagttttt ... ctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATA
gatttgaagcgtagtctcgtagcactggataacccgtttcatgctctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAATAAGGGTCGTTTTACCCTTCACCACATCAGTGCTGAAGAAGCCAAG
ggataac putative branch site (score: 24)
tgctctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttttgcagtcttattgaaagtttctttttagatatatgctttttggaatcatgaatgtttgtttttatgaatttatgtatggggataaacttgggtcatgcagactgatcgtcttttactcatacacgatttgaagcgtagtctcgtagcactggataacccgtttcatgctctcaatacagATGTCATCTCTATTGCCAAGACCAACGAGAATTTCCGTCTGTTGTATGATAATAAGGGTCGTTTTACCCTTCACCACATCAGTGCTGAAGAAGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC