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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cactttgttgacttttcataaatctattgcagtgtctcaactagataagcaagtgcttggtggttttactaaatacggcagttgtttccgcctttcgcagGATGATACGTCTCTCTCTTGGCGAAAACACAAAAAGCATTTCTTTATCCTTAGCTATGCAGGAAAACCGATATATTCCAG

Basic information

species Physcomitrella patens
transcript PP1S452_21V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162154930|gb|FC331972.1|FC331972
EST:     ACCGACCGGCGAGGCGAACTTGGGTTCCTGGAAAGCGTCATCCAGAAGAG                         GATGATACGTCTCTCTCTTGGCGAAAACACAAAAAGCATTTCTTTATCCTT
genomic: ACCGACCGGCGAGGCGAACTTGGGTTCCTGGAAAGCGTCATCCAGAAGAGgtcattttca ... cctttcgcagGATGATACGTCTCTCTCTTGGCGAAAACACAAAAAGCATTTCTTTATCCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcaagtgcttggtggttttactaaatacggcagttgtttccgcctttcgcagGATGATACGTCTCTCTCTTGGCGAAAACACAAAAAGCATTTCTTTATCCTTAGCTATGCAGGAAAACCGATATATTCCAG
                     tactaaa  putative branch site (score: 1)
                                    ttgtttccgcctttc  putative PPT
                  ttttactaaata  TA-rich tract