1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttccatgcaaagtgttatgtatgttcctctttttgtggactaagatgctgtgcaaactagtgttgtctctaacatgagaattcttgattccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTGAAGAAGAAAGGTGAGAAGTTTTTCTTTCCTGGTGGAGGTACGATGTTT
species | Physcomitrella patens |
transcript | PP1S43_170V6.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|18350697|gb|BJ182748.1|BJ182748
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|162171558|gb|FC347499.1|FC347499
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|18342914|gb|BJ174950.1|BJ174950
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|18355637|gb|BJ187696.1|BJ187696
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|162169959|gb|FC345899.1|FC345899
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|208364567|gb|DC935352.1|DC935352
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|18349385|gb|BJ181434.1|BJ181434
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGEST: gi|162156233|gb|FC332049.1|FC332049
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGG
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|18342843|gb|BJ174879.1|BJ174879
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTEST: gi|100407198|gb|BY974050.1|BY974050
genomic: TATAAAGTTCCTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
EST: CTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAG AAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
genomic: CTATTCATTGGCCAAAGAGTCGGGATGAATGCTGGTACAGgtgggtctca ... ccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTT
atgctgtgcaaactagtgttgtctctaacatgagaattcttgattccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTGAAGAAGAAAGGTGAGAAGTTTTTCTTTCCTGGTGGAGGTACGATGTTT
aattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccatgcaaagtgttatgtatgttcctctttttgtggactaagatgctgtgcaaactagtgttgtctctaacatgagaattcttgattccacgttcagAAATGTTCCGTATGAATGGATCAACAGTGTGAAGGCCAATCAAAACTGGTTGAAGAAGAAAGGTGAGAAGTTTTTCTTTCCTGGTGGAGGTACGATGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG