1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgacacttccaatggtagttatgattctactatatttgtgcagtaaattatcatttgttatccatgtgaacgatatgtaatgatttgattgtttttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGTAGACAACACTAACTAGCCGAAAACCCCAGAGCTCGAATCTTGAGGTTG
species | Physcomitrella patens |
transcript | PP1S42_224V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTGGAGTAGTGGACCGACCCAGTGGNCAG AAGGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTNCCTCCCCCCTAAGEST: gi|208396847|gb|DC924375.1|DC924375
genomic: AGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAA-GGGAAAAGAGCCATATGTGTCTGACTTGGACCTT-CCT-CCCCCTAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGEST: gi|162225957|gb|FC400975.1|FC400975
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGEST: gi|208354546|gb|DC918656.1|DC918656
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGEST: gi|18338000|gb|BJ170024.1|BJ170024
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGEST: gi|15728403|gb|BI740770.1|BI740770
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGEST: gi|162225958|gb|FC400976.1|FC400976
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGEST: gi|162201898|gb|FC376896.1|FC376896
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGEST: gi|208364166|gb|DC943422.1|DC943422
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAANAAGEST: gi|162241274|gb|FC416905.1|FC416905
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGEST: gi|100410651|gb|BY992202.1|BY992202
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAATGAACCGACCCAGTGGACCG AAGGGAAAAGAEST: gi|208351239|gb|DC921546.1|DC921546
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGA
EST: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAG AAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCNTAAGAAG
genomic: CCCTAACAACCTTCACGCGAGGTGGAGTAGTGGACCGACCCAGTGGACAGgtatgacact ... tttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAG
tatcatttgttatccatgtgaacgatatgtaatgatttgattgtttttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGTAGACAACACTAACTAGCCGAAAACCCCAGAGCTCGAATCTTGAGGTTG
atttgat putative branch site (score: 14)
ttgttttt CT-rich tract
atttgattgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacacttccaatggtagttatgattctactatatttgtgcagtaaattatcatttgttatccatgtgaacgatatgtaatgatttgattgtttttagtgcagAAGGGAAAAGAGCCATATGTGTCTGACTTGGACCTTCCTCCCCCTAAGAAGTAGACAACACTAACTAGCCGAAAACCCCAGAGCTCGAATCTTGAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT