1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taagtagtttcgtgctgggtgtcagcccggtatgggtaccgatttgaacgtgaaggagaatagtttaattcatgtgcatgttttatggccttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTACAGGAGTTGCAAGTGGAGTATTCAGATCAAGAAATTGAGGAATTTCATCA
species | Physcomitrella patens |
transcript | PP1S429_31V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAG ATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTACEST: gi|18363372|gb|BJ195444.1|BJ195444
genomic: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAGgtttggaaac ... ttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTAC
EST: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAG ATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTACEST: gi|100417874|gb|BY993227.1|BY993227
genomic: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAGgtttggaaac ... ttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTAC
EST: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAG ATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTACEST: gi|100384207|gb|BY969338.1|BY969338
genomic: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAGgtttggaaac ... ttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTAC
EST: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAG ATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTACEST: gi|18365459|gb|BJ197535.1|BJ197535
genomic: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAGgtttggaaac ... ttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTAC
EST: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAG ATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTACEST: gi|67577673|gb|BJ949840.1|BJ949840
genomic: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAGgtttggaaac ... ttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTAC
EST: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAG ATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTAC
genomic: GAAGATTGACGCCTCATTTGAAGCCGTCAGAGAAGTTTTCAATAAAGCAGgtttggaaac ... ttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTAC
gaacgtgaaggagaatagtttaattcatgtgcatgttttatggccttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTACAGGAGTTGCAAGTGGAGTATTCAGATCAAGAAATTGAGGAATTTCATCA
gtttaat putative branch site (score: 4)
ccttgtcccc putative PPT
aatagtttaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtagtttcgtgctgggtgtcagcccggtatgggtaccgatttgaacgtgaaggagaatagtttaattcatgtgcatgttttatggccttgtccccagATAAGAATGGGGATGGTTCCTTGGACATGGAGGAGTTGAAGCAGTGTCTACAGGAGTTGCAAGTGGAGTATTCAGATCAAGAAATTGAGGAATTTCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA