1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaaatccatctagctgaaatcgaaaataatacagaaacgttattttgctttataagaatgatgtggtattggcactgaattatttcttaatcgtctgtagATCAATTCTGTCAAGTTCAATGAATATGCAGCGGCACTTATTTCGGGTGGCGGTGATCGCAGCGTTCGTGCGTGGGATTGCCGCTCTAACAGATTCGATC
species | Physcomitrella patens |
transcript | PP1S427_22V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTTCATCTGGCCGTATCATTCGCAAGTTTCAAGGCCATGATGCCGAG ATCAATTCTGTCAAGTTCAATGAATATGCAGCGGCACTTATTTCGGGTGGCEST: gi|162167496|gb|FC344200.1|FC344200
genomic: ATGTTTCATCTGGCCGTATCATTCGCAAGTTTCAAGGCCATGATGCCGAGgtttggtctc ... tcgtctgtagATCAATTCTGTCAAGTTCAATGAATATGCAGCGGCACTTATTTCGGGTGGC
EST: ATGTTTCATCTGGCCGTATCATTCGCAAGTTTCAAGGCCATGATGCCGAG ATCAATTCTGTCAAGTTCAATGAATATGCAGCGGCACTTATTTCGGGTGGCEST: gi|100389519|gb|BY988997.1|BY988997
genomic: ATGTTTCATCTGGCCGTATCATTCGCAAGTTTCAAGGCCATGATGCCGAGgtttggtctc ... tcgtctgtagATCAATTCTGTCAAGTTCAATGAATATGCAGCGGCACTTATTTCGGGTGGC
EST: ATGTTTCATCTGGCCGTATCATTCGCAAGTTTCAAGGCCATGATGCCGAG ATCAATTCTGTCAAGTTCAATGAATATGCAGCGGCACTTATTTCGGGTGGC
genomic: ATGTTTCATCTGGCCGTATCATTCGCAAGTTTCAAGGCCATGATGCCGAGgtttggtctc ... tcgtctgtagATCAATTCTGTCAAGTTCAATGAATATGCAGCGGCACTTATTTCGGGTGGC
tgctttataagaatgatgtggtattggcactgaattatttcttaatcgtctgtagATCAATTCTGTCAAGTTCAATGAATATGCAGCGGCACTTATTTCGGGTGGCGGTGATCGCAGCGTTCGTGCGTGGGATTGCCGCTCTAACAGATTCGATC
tcttaat putative branch site (score: 8)
tgaattatttcttaat TA-rich tract