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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtagttggcgaatatgtgagactcaagttggtgagcacagtatttgcaacattccaagtatgcaaagagattcaataaaagattctagatactatcaaaccctaacgaaatctgtttgattgtacaaatccacagGTGCTGTCAAAGTCCTCGAAAATGATTCCAG

Basic information

species Physcomitrella patens
transcript PP1S426_7V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S426_7V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA02G02330.1 (Glycine max), 3'ss of exon 3
gtatgtgtagttggcgaatatgtgagactcaagttggtgagcacagtatttgcaacattccaagtatgcaaagagattcaataaaagattctagatactatcaaaccctaacgaaatctgtttgattgtacaaatccacagGTGCTGTCAAAGTCCTCGAAAATGATTCCAG
                                     ||    ||| |||||        ||    ||   ||  ||||| |        |   |  |||| ||    | |     |    || ||| | | | |   ||||||||| |||||||||| |||||||||||||
------------------------------------atgc-tgcagcatttgtgtggactcat---tgttcagtcattcagtgtctttagcattaggctataaactttttaatgggtggtgttaattttgctactt-gcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattctagatactatcaaaccctaacgaaatctgtttgattgtacaaatccacagGTGCTGTCAAAGTCCTCGAAAATGATTCCAG
        atactat  TA-rich tract