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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttgtattctgttcatctttaggagttctgcatggaagatctcttgctctgcgaggataattatattttagtttggtggaatgttacactgtaatgctggtggtgcagatgatgtagttctctattgtctatcctgatatgtcatccttgtgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCTACTGCAGCTTCTAGTAAGAGAGCTTTCTCTGCCCCCATTAGTACTCGAA

Basic information

species Physcomitrella patens
transcript PP1S41_288V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386941|gb|BY988210.1|BY988210
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100362100|gb|BY966332.1|BY966332
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|208389785|gb|DC938333.1|DC938333
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|67574213|gb|BJ947037.1|BJ947037
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18367079|gb|BJ199159.1|BJ199159
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGGAAATTTGCGGA
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGG-AAATTTGCGGA
EST: gi|162261873|gb|FC438397.1|FC438397
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATNTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|162208338|gb|FC384650.1|FC384650
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|67569697|gb|BJ942521.1|BJ942521
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18358000|gb|BJ190059.1|BJ190059
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18367904|gb|BJ199987.1|BJ199987
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGGAAATTTGCGGA
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGG-AAATTTGCGGA
EST: gi|18373417|gb|BJ204995.1|BJ204995
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAG
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAG
EST: gi|67507947|gb|BJ940822.1|BJ940822
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|67570034|gb|BJ942858.1|BJ942858
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18331944|gb|BJ163956.1|BJ163956
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAG
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAG
EST: gi|100393083|gb|BY989735.1|BY989735
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100383314|gb|BY987055.1|BY987055
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|208368231|gb|DC931457.1|DC931457
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|22132263|gb|BQ827064.1|BQ827064
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100443023|gb|BY981649.1|BY981649
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18368770|gb|BJ200855.1|BJ200855
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGGAAATTTGCGGAG
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGG-AAATTTGCGGAG
EST: gi|18343655|gb|BJ175693.1|BJ175693
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|162208337|gb|FC384649.1|FC384649
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATNTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18345702|gb|BJ177745.1|BJ177745
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGA
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGA
EST: gi|100388445|gb|BY952047.1|BY952047
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAACGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18343615|gb|BJ175653.1|BJ175653
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18364030|gb|BJ196103.1|BJ196103
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100447071|gb|CJ971370.1|CJ971370
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100442970|gb|BY963465.1|BY963465
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|208389289|gb|DC933317.1|DC933317
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|208391882|gb|DC945961.1|DC945961
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100447799|gb|CJ972098.1|CJ972098
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100392179|gb|BY953233.1|BY953233
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18348521|gb|BJ180570.1|BJ180570
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGA
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGA
EST: gi|100416674|gb|BY993031.1|BY993031
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100402967|gb|BY973441.1|BY973441
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTACTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|162261874|gb|FC438398.1|FC438398
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|18345749|gb|BJ177792.1|BJ177792
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
EST: gi|100383489|gb|BY950273.1|BY950273
EST:     AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG                         GGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT
genomic: AGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 58

ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAGgtgttgtatt ... tgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCTACTGCAGCTTCTAGTAAGAGAGCTTTCTCTGCCCCCATTAGTACTCGAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatgatgtagttctctattgtctatcctgatatgtcatccttgtgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCTACTGCAGCTTCTAGTAAGAGAGCTTTCTCTGCCCCCATTAGTACTCGAA
                          tcctgat  putative branch site (score: 58)
                                       tccttgt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgttgtattctgttcatctttaggagttctgcatggaagatctcttgctctgcgaggataattatattttagtttggtggaatgttacactgtaatgctggtggtgcagatgatgtagttctctattgtctatcctgatatgtcatccttgtgtcttacagGGGAAATTTGCGGAGGCTAGAGCCCGTAATGGCGCTGCTAGTTTTCCTGCTACTGCAGCTTCTAGTAAGAGAGCTTTCTCTGCCCCCATTAGTACTCGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT