1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttggattacgacttttatgcgcttcaggcagcccattattatttttaatttgtagttgagaaattgttttgacacttggctattctttggaatcctcagCCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTATCCCATTTATATGTCGAGAAGAGAAGGACGAAAATCTGTACCACAATGA
species | Physcomitrella patens |
transcript | PP1S41_144V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGTTCATCAGCTTGCGCACAACTAGCTTTCTGCGCACCAATCTCACTG CCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTAEST: gi|100448929|gb|CJ973228.1|CJ973228
genomic: GAAGTTCATCAGCTTGCGCACAACTAGCTTTCTGCGCACCAATCTCACTGgtatttaagt ... gaatcctcagCCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTA
EST: GAAGTTCATCAGCTTGCGCACAACTAGCTTTCTGCGCACCAATCTCACTG CCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTAEST: gi|100365130|gb|BY966825.1|BY966825
genomic: GAAGTTCATCAGCTTGCGCACAACTAGCTTTCTGCGCACCAATCTCACTGgtatttaagt ... gaatcctcagCCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTA
EST: GAAGTTCATCAGCTTGCGCACAACTAGCTTTCTGCGCACCAATCTCACTG CCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTA
genomic: GAAGTTCATCAGCTTGCGCACAACTAGCTTTCTGCGCACCAATCTCACTGgtatttaagt ... gaatcctcagCCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTA
ttaatttgtagttgagaaattgttttgacacttggctattctttggaatcctcagCCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTATCCCATTTATATGTCGAGAAGAGAAGGACGAAAATCTGTACCACAATGA
ttttgac putative branch site (score: 3)
tcctc putative PPT
aaattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggattacgacttttatgcgcttcaggcagcccattattatttttaatttgtagttgagaaattgttttgacacttggctattctttggaatcctcagCCTGGTTTTTATTGGAGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTATCCCATTTATATGTCGAGAAGAGAAGGACGAAAATCTGTACCACAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA