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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctatgcacaaactcaaattctactgattctaatcgttttcctctcagttgttaagattttctgctgatcatagcacaaatctattcctctttgttctaactgaagtctgccatggtgtatcagCTCTGCATGAAGCTCTACGAGACGAAGTTCAGCGTTTGAAAGTTGCAACTGGTCAGAACTTGAATATGAGTGGGCAGCATGTGTTTCAGACGCAGAAACT

Basic information

species Physcomitrella patens
transcript PP1S3_401V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S3_401V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os12g06520.1 (Oryza sativa), 3'ss of exon 3
gtacctatgcacaaactcaaattctactgattctaatc-gttttcctctcagttgttaagattttctgctgatcatagcacaaatctattcctctt-tgttctaactgaagtctgccatggtgtatcagCTCTGCATGAAGCTCTACGAGACGAAGTTCAGCGTTTGAAAGTTGCAACTGGTCAGAACTTGAATATGAGTGGGCAGCATGT--GTTTCAGACGCAGAAACT
                             ||  |  || |||   || | |||     | |  ||   |      |        | |   | |    | |  ||    ||   |  | |  |    |||||||| |||||||||| ||||| |||||||||||  | ||  | ||| | || ||       || ||||  ||| | |   |   |    ||| |  | |  
-----------------------------atgttggtctgttgctctgttagtaagacaaaaattggacgtgctctgttttttctttgcccatgaagtatgttatggaaaaaatatccttctcatgcagCTCTGAATGAAGCTCTGCGAGAAGAAGTTCAGCGACTTAAGATAGCAGCAGGGCAAGCTCCAAACATGAACGGGAATCCCTTCAATGGTGGACTCCAACA--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagcacaaatctattcctctttgttctaactgaagtctgccatggtgtatcagCTCTGCATGAAGCTCTACGAGACGAAGTTCAGCGTTTGAAAGTTGCAACTGGTCAGAACTTGAATATGAGTGGGCAGCATGTGTTTCAGACGCAGAAACT
                         ttctaac  putative branch site (score: 1)
        aaatctatt  TA-rich tract