Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcaagtgtatttaacaagaggcttattgttgtagtgacctatcaacgctcgttctactttcttgtgagtgattttcttttgttttacccttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG

Basic information

species Physcomitrella patens
transcript PP1S39_422V6.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 4
-tgtcaagtgtatttaacaagaggcttattgttgtagtgacctatcaacgctcgttctactttcttgtgagtgattttctt--ttgttttacccttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG
   ||  |  |   | | | ||  ||   |  |  |   || |   |   ||| ||||  ||  | |  | || || |  |  || | ||| |  |||  |||||||  |||||||| |||||||||| |||||||||||| |  | |||||||  || || || ||||  || |||   || || |  |||||||| |||
acatcctgctttgctgata-gaatctctctactaaaaacacttga-actcctcattctggttgttggc-actgtttcttctaattttgttatctgtttaccagATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67728268|gb|BJ978527.1|BJ978527
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67725765|gb|BJ976024.1|BJ976024
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|208381962|gb|DC923458.1|DC923458
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162222486|gb|FC397207.1|FC397207
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67726924|gb|BJ977183.1|BJ977183
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|37828603|gb|BJ586615.1|BJ586615
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162278195|gb|FC454430.1|FC454430
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67725062|gb|BJ975321.1|BJ975321
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATACAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|18331092|gb|BJ163098.1|BJ163098
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67723906|gb|BJ974165.1|BJ974165
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162258263|gb|FC434662.1|FC434662
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTG-TATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162244480|gb|FC422653.1|FC422653
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162258593|gb|FC434808.1|FC434808
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162256663|gb|FC433181.1|FC433181
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162256664|gb|FC433182.1|FC433182
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162262039|gb|FC436846.1|FC436846
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67697946|gb|BJ958179.1|BJ958179
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|18335679|gb|BJ167699.1|BJ167699
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162207390|gb|FC383947.1|FC383947
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67704660|gb|BJ964893.1|BJ964893
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTATTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|19780043|gb|BQ039503.1|BQ039503
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162198061|gb|FC372088.1|FC372088
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|19789495|gb|BQ041339.1|BQ041339
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|7047344|gb|AW477238.1|AW477238
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATGCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67724739|gb|BJ974998.1|BJ974998
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162270732|gb|FC446345.1|FC446345
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67720483|gb|BJ970742.1|BJ970742
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162258264|gb|FC434663.1|FC434663
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162274814|gb|FC450841.1|FC450841
EST:     ACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: ACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|208394810|gb|DC920153.1|DC920153
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|37851759|gb|BJ609767.1|BJ609767
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|37824548|gb|BJ582614.1|BJ582614
EST:     TCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: TCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|19789420|gb|BQ041298.1|BQ041298
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|37833221|gb|BJ591233.1|BJ591233
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162242259|gb|FC416067.1|FC416067
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67726242|gb|BJ976501.1|BJ976501
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67720142|gb|BJ970401.1|BJ970401
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|208367289|gb|DC951249.1|DC951249
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162273105|gb|FC447799.1|FC447799
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67724414|gb|BJ974673.1|BJ974673
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|208382538|gb|DC919762.1|DC919762
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162222487|gb|FC397208.1|FC397208
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|19778892|gb|BQ039373.1|BQ039373
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67720426|gb|BJ970685.1|BJ970685
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|208357452|gb|DC953776.1|DC953776
EST:     CATCGACGGCCAGGTCCGCACTGATAAGTG-TATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162276377|gb|FC452133.1|FC452133
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|67726804|gb|BJ977063.1|BJ977063
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|208395596|gb|DC929011.1|DC929011
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
EST: gi|162246270|gb|FC421977.1|FC421977
EST:     CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGG                         ATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA
genomic: CATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 33

GCATTGACCTACCGTGAAGTGGTTGCTATTGTCATGCAACGCCTTATTTCCATCGACGGCAAGGTCCGCACTGATAAGTGTTATCCAGCAGGGTTTATGGgtgagtaact ... cttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgctcgttctactttcttgtgagtgattttcttttgttttacccttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG
                            ttttcttttgttttac  CT-rich tract
                           attttcttttgtttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtcaagtgtatttaacaagaggcttattgttgtagtgacctatcaacgctcgttctactttcttgtgagtgattttcttttgttttacccttttgtcagATGTGATATCCATTGCCAAGACAAACGAGAACTTCCGTTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGTGCGGAGGAGGCGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG