1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attgttgcagtaacctacaataccattgtatcgatgtggcgtagatatttatctagccgccgactgtggagtgattggatcaatcgtttggcaattgcagGGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTACATTGAAGTACCGAGAATCGAGATGGTGCCCCGAGTGATCACTGAAGCT
species | Physcomitrella patens |
transcript | PP1S39_407V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACCCTGTTGTGCGACAGGTGCCCAAGACTAGAATTGAGATTGTCCACAG AGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTAEST: gi|162267702|gb|FC443484.1|FC443484
genomic: GTCCCTGTTGTGCGACAGGTGCCCAAGACTAGAATTGAGATTGTCCACAGgcgagaaaac ... gcaattgcagGGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTA
EST: GTCCCTGTTGTGCGACAGGTGCCCAAGACTAGAATTGAGATTGTCCACAG GGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTAEST: gi|208395855|gb|DC911864.1|DC911864
genomic: GTCCCTGTTGTGCGACAGGTGCCCAAGACTAGAATTGAGATTGTCCACAGgcgagaaaac ... gcaattgcagGGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTA
EST: GTCCCTGTTGTGCGACAGGTGCCCAAGACTANAATTGAGATTGTCCACAG GGTGGTTACAGAGGAACGCGAGGTGACCGATATANTGCAAGTTGTGGANTAEST: gi|162267703|gb|FC443485.1|FC443485
genomic: GTCCCTGTTGTGCGACAGGTGCCCAAGACTAGAATTGAGATTGTCCACAGgcgagaaaac ... gcaattgcagGGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTA
EST: GTCCCTGTTGTGCGACAGGTGCCCAAGACTAGAATTGAGATTGTCCACAG GGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTA
genomic: GTCCCTGTTGTGCGACAGGTGCCCAAGACTAGAATTGAGATTGTCCACAGgcgagaaaac ... gcaattgcagGGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgttgcagtaacctacaataccattgtatcgatgtggcgtagatatttatctagccgccgactgtggagtgattggatcaatcgtttggcaattgcagGGTGGTTACAGAGGAGCGCGAGGTGACCGATATAGTGCAAGTTGTGGAGTACATTGAAGTACCGAGAATCGAGATGGTGCCCCGAGTGATCACTGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC