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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgacgttgatacatctcaagtcatttcctttcagtgttctaagatgttttacgtgcatgctagtgtaatacagcataactacggtcaacgttgacagtacaaggtggtggtttgtattccctgtactgttaggttagatttttttaagatctagaagtcattcttcatctgatcctttgatcatttactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTGCGGAATGGTGAGCTTCAGAGAAAATTAGATGCCCTCACAAGATATCGCC

Basic information

species Physcomitrella patens
transcript PP1S395_51V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18365368|gb|BJ197443.1|BJ197443
EST:     CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAG                         CTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
genomic: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgtt ... tactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
EST: gi|208392516|gb|DC933930.1|DC933930
EST:     CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAG                         CTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
genomic: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgtt ... tactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
EST: gi|208392081|gb|DC941929.1|DC941929
EST:     CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAG                         CTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
genomic: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgtt ... tactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
EST: gi|18366626|gb|BJ198705.1|BJ198705
EST:     CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAG                         CTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG
genomic: CTTTCACAAGGTTTATTGGAGTAGTAACAGCATATCGTCGCGAAAAAGAGgtgtgacgtt ... tactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttaagatctagaagtcattcttcatctgatcctttgatcatttactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTGCGGAATGGTGAGCTTCAGAGAAAATTAGATGCCCTCACAAGATATCGCC
                                           tttactc  CT-rich tract
                                       atcattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgacgttgatacatctcaagtcatttcctttcagtgttctaagatgttttacgtgcatgctagtgtaatacagcataactacggtcaacgttgacagtacaaggtggtggtttgtattccctgtactgttaggttagatttttttaagatctagaagtcattcttcatctgatcctttgatcatttactcaacagCTGGAGTTACGACTCTGTTCTTTGAGGCATGATTATGAAGACTTGAAATTGCGGAATGGTGAGCTTCAGAGAAAATTAGATGCCCTCACAAGATATCGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT