1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttatctctcttgatccagtttgtgcatggttcgaacctatgatatttttgtagctacgtgaaatagttgtcttggctagcatagttcttatcctcgcacctgttctctttctttcaagtcgtataaacgggtttcaacaattttggttatgtttcgcagGCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCACTTGGTCAGTTATGTGAACGGTTTCAGAAGTACGAGAAACTGGCGGACT
species | Physcomitrella patens |
transcript | PP1S395_20V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTG GCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCAEST: gi|162239030|gb|FC416195.1|FC416195
genomic: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTGgtgagttatc ... tgtttcgcagGCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCA
EST: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTG GCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCAEST: gi|162239600|gb|FC416856.1|FC416856
genomic: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTGgtgagttatc ... tgtttcgcagGCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCA
EST: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTG GCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCAEST: gi|18347934|gb|BJ179981.1|BJ179981
genomic: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTGgtgagttatc ... tgtttcgcagGCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCA
EST: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTG GCAATGTCGAAGGACATGAAGTTGEST: gi|208399387|gb|DC924817.1|DC924817
genomic: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTGgtgagttatc ... tgtttcgcagGCAATGTCGAAGGACATGAAGTTG
EST: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTG GCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCAEST: gi|162247717|gb|FC421724.1|FC421724
genomic: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTGgtgagttatc ... tgtttcgcagGCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCA
EST: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTG GCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCA
genomic: AAAGGGTTTACATTAGTCGACTTATTTTGAAACATGGAGATGACTACGTGgtgagttatc ... tgtttcgcagGCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCA
ctctttctttcaagtcgtataaacgggtttcaacaattttggttatgtttcgcagGCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCACTTGGTCAGTTATGTGAACGGTTTCAGAAGTACGAGAAACTGGCGGACT
aacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttatctctcttgatccagtttgtgcatggttcgaacctatgatatttttgtagctacgtgaaatagttgtcttggctagcatagttcttatcctcgcacctgttctctttctttcaagtcgtataaacgggtttcaacaattttggttatgtttcgcagGCAATGTCGAAGGACATGAAGTTGAATAAGATGCAGCACCCACCTGGAGCACTTGGTCAGTTATGTGAACGGTTTCAGAAGTACGAGAAACTGGCGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT