1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaactctccttcccaatgcgataccagtgtagcatttcttgaggctttaatttttgaatggaggacattaagagtactcagtacagttcagaaacattttgtgggcatgaatcgttatccttttggtaggcctttcgctaatactgccattgcttgatttagATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATTCTCCCTGAACAGCTCTCTGGCAAAGACACGAAGTATAAGATGCCCAAT
species | Physcomitrella patens |
transcript | PP1S392_39V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAACGATGATGTCTGCAGACTGTTAGAACAGCATGGCGCTAGATTAAAA ATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATTEST: gi|162172776|gb|FC348365.1|FC348365
genomic: ACAACGATGATGTCTGCAGACTGTTAGAACAGCATGGCGCTAGATTAAAAgtaaaactct ... cttgatttagATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATT
EST: ACAACGATGATGTCTGCAGACTGTTAGAACAGCATGGCGCTAGATTAAAA ATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATTEST: gi|162202695|gb|FC379508.1|FC379508
genomic: ACAACGATGATGTCTGCAGACTGTTAGAACAGCATGGCGCTAGATTAAAAgtaaaactct ... cttgatttagATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATT
EST: ACAACGATGATGTCTGCAGACTGTTAGAACAGCATGGCGCTAGATTAAAA ATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATT
genomic: ACAACGATGATGTCTGCAGACTGTTAGAACAGCATGGCGCTAGATTAAAAgtaaaactct ... cttgatttagATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATT
tgaatcgttatccttttggtaggcctttcgctaatactgccattgcttgatttagATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATTCTCCCTGAACAGCTCTCTGGCAAAGACACGAAGTATAAGATGCCCAAT
ttgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaactctccttcccaatgcgataccagtgtagcatttcttgaggctttaatttttgaatggaggacattaagagtactcagtacagttcagaaacattttgtgggcatgaatcgttatccttttggtaggcctttcgctaatactgccattgcttgatttagATCTCATCCATGCGAGTGGCTACTACAAAAGAAATTCCTGAGTATGAGATTCTCCCTGAACAGCTCTCTGGCAAAGACACGAAGTATAAGATGCCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG