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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggaatccctgatccagtgcgagaataatgtattttaataagtgaatttttgccaaaatttgtgcacctataatgtaaattacatctatgttaagtttccctccgtatacgtgggatgcgtagtgggtatggatcaaaagaaatggtaaatctacttatgcgagtgctgatatttagaactgtatcgatgcagCTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAACTCACACCCTCTTTGGCCCGCCTTGTATTGCAGAAAGG

Basic information

species Physcomitrella patens
transcript PP1S38_401V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159259|gb|FC334592.1|FC334592
EST:     AGTCTGAAGAACTTTATACCCGCAAAGCTGGTGAAGAGATTGTTGGGCAG                         CTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAA
genomic: AGTCTGAAGAACTTTATACCCGCAAAGCTGGTGAAGAGATTGTTGGGCAGgtacggaatc ... atcgatgcagCTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAA
EST: gi|162250565|gb|FC428468.1|FC428468
EST:     AGTCTGAAGAACTTTATACCCGCAAAGCTGGTGAAGAGATTGTTGGGCAG                         CTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAA
genomic: AGTCTGAAGAACTTTATACCCGCAAAGCTGGTGAAGAGATTGTTGGGCAGgtacggaatc ... atcgatgcagCTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAA
EST: gi|162181950|gb|FC357757.1|FC357757
EST:     AGTCTGAAGAACTTTATACCCGCAAAGCTGGTGAAGAGATTGTTGGGCAG                         CTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAA
genomic: AGTCTGAAGAACTTTATACCCGCAAAGCTGGTGAAGAGATTGTTGGGCAGgtacggaatc ... atcgatgcagCTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAA
EST: gi|162152313|gb|FC328500.1|FC328500
EST:     AGTCTGAAGAACTTTATACCCGCAAAGCTGGTGAAGAGATTGTTGGGCAG                         CTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAA
genomic: AGTCTGAAGAACTTTATACCCGCAAAGCTGGTGAAGAGATTGTTGGGCAGgtacggaatc ... atcgatgcagCTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaatggtaaatctacttatgcgagtgctgatatttagaactgtatcgatgcagCTCTATAATTTTGAGGACAAAGGTGGGAGAAAGGTGGCGCTACGGCCTGAACTCACACCCTCTTTGGCCCGCCTTGTATTGCAGAAAGG
                          tgctgat  putative branch site (score: 3)
                               atatttagaa  TA-rich tract