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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctggctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT

Basic information

species Physcomitrella patens
transcript PP1S38_329V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 2
gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctggctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT
                                                                         | || |||| ||     |  |  | || || |  |  | | |         ||  |||| |  |||  ||      | || |      |||  |||||  |||||  || || || || ||| | || |||||| |  | || | ||| |||||||||||||||||||| ||||||||||| |  || ||| |||||
-------------------------------------------------------------------------gtaagtcaagttcaa--gagaccgaggcgtttccaagtcaag---------tcaaggttttgacgtactt-----aatctcatt----tgtcattgtt--tgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT

upper sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 3'ss of exon 2
gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctggctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT
                                                                                || ||   |   |||  |    |||   | | | |  |||||    ||   | | ||    ||  || |  || |   | || || |  |   |||||  || || || || ||| | || |||||| |  | || | ||| |||||||||||||||||||| ||||||||||| |  ||          
------------------------------------------------------------------------------gtaagttcaat-ataatcctttcatgt--ggctcatgcattctgtgcttgtaatatagctaggttttgatgtacttaatctcatttgttattgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTT---------

upper sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA16G03170.1 (Glycine max), 3'ss of exon 2
gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctggctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttga-tgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT
                                                                                     |  | | |   ||  | | ||    |    || | |    ||| | |  |||||  |  |       | | || ||| |  |||||   |||||  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||||||||| || || | ||| || || || 
------------------------------------------------------------------------------------gtattcgcatccgtt-tattttctcttcgtcgtgtttaatgctgcgct-ctgcgtactctgttta---taacggcgatat--ttgttatctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACCCCGAAATATCGCTTTGTTGTTCGTTTC

upper sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 2
gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctggctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT
                                                                                       |||   ||  | |  | ||| | || |    ||  | ||     |||||  |  |  |   |   | | ||||||   |||     |||||  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||| ||||| ||||| | ||| || || |||
---------------------------------------------------------------------------------------gttatcatattcgcctattttgttttg----tcatgttcaa---tgttgaatactctgttag---taacggtgattctgttacc--tgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT

upper sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA13G35580.2 (Glycine max), 3'ss of exon 2
gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctg-gctctgggttgttgcgtttttcggagga-gctgagggtgatgtggttgttga-tgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT
                                                                                                     || || |  ||    ||| |  | |  |   |||||  | ||    | || | | |   || ||   |||||   |||||  || ||||||||||||||||| |||||||| |||| ||  ||||| |||||||| || ||||| ||||| ||||| | ||| || || |||
-----------------------------------------------------------------------------------------------------gttttcattttctacttttttcgtttcgtcgtgttgaatgttgaatacgatgtttataatggtgattttgttatctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT

upper sequence: PP1S38_329V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT5G39740.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctggctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT--------
                                                    || || |||| | |    | |  |  |  | || | ||       || | | |  || |||     | |||   | ||| |||| |   |       || ||  | |  | |  |      || ||  || || || |||||| | || ||||| ||| | |  |  || || |||||||||||||||||||| |||||||||| ||| || ||||||        
----------------------------------------------------gtattgatctgttgttactgtcaagctagacttcgctttttggtctgttatatagagttta-----tatgggattaggt-gttgtgacct----gaaagttgttgttcttataatc-----tgtagATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAACAAGTACAACACCCCTAAGTACCGTTTTGTTGTTCGATTTACCAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208389889|gb|DC937720.1|DC937720
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162215586|gb|FC391665.1|FC391665
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|100372326|gb|BY985544.1|BY985544
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208389794|gb|DC937429.1|DC937429
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|18354041|gb|BJ186096.1|BJ186096
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|19789832|gb|BQ041538.1|BQ041538
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|18351731|gb|BJ183783.1|BJ183783
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|18355260|gb|BJ187319.1|BJ187319
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162232208|gb|FC408057.1|FC408057
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162239200|gb|FC416482.1|FC416482
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208364389|gb|DC950690.1|DC950690
EST:     GGTTTCAGGTCAAGTACCAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162233764|gb|FC410030.1|FC410030
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|67573430|gb|BJ946254.1|BJ946254
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|18351584|gb|BJ183636.1|BJ183636
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|19781204|gb|BQ039665.1|BQ039665
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162208026|gb|FC384221.1|FC384221
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|100430202|gb|BY959750.1|BY959750
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208389761|gb|DC938323.1|DC938323
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208349865|gb|DC905989.1|DC905989
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|67716531|gb|BJ966791.1|BJ966791
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162273383|gb|FC449832.1|FC449832
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|18373232|gb|BJ204834.1|BJ204834
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208346882|gb|DC905426.1|DC905426
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208386339|gb|DC932835.1|DC932835
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|18329908|gb|BJ161914.1|BJ161914
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|67709595|gb|BJ965411.1|BJ965411
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|18331702|gb|BJ163713.1|BJ163713
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|67726492|gb|BJ976751.1|BJ976751
EST:     GTTTCAGGTCAAGTACCAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCCAGGATAAG
genomic: GTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTA-CCCAGGATAAG
EST: gi|208391477|gb|DC937625.1|DC937625
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|18347318|gb|BJ179364.1|BJ179364
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|67717988|gb|BJ968247.1|BJ968247
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|67716844|gb|BJ967103.1|BJ967103
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208380043|gb|DC914593.1|DC914593
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|15728298|gb|BI740717.1|BI740717
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208382921|gb|DC928346.1|DC928346
EST:     GACCAAGGCCTACTTCAAAAGNTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTANCCGTGCGAGGATTCGTTTGACTACCCAGGATAAG
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTA-CCGTGCGAGGATTCGTTTGACTACCCAGGATAAG
EST: gi|208345094|gb|DC909456.1|DC909456
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162266658|gb|FC442837.1|FC442837
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208355830|gb|DC930193.1|DC930193
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162217825|gb|FC393613.1|FC393613
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|100449524|gb|CJ973802.1|CJ973802
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|208365341|gb|DC950784.1|DC950784
EST:     TTCAAAAGGTTTCAGGTTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: TTCAAAAGGTTTCAGG-TCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|162275294|gb|FC451478.1|FC451478
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA
EST: gi|100431327|gb|BY960140.1|BY960140
EST:     GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG                         CCGGTAAAACCGATTACCGTGTGAGGATTCGTTTGACTACCCAGGATAAGA
genomic: GACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 22

GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAGgtgagtgggt ... gttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT
                                            tgttgat  putative branch site (score: 22)
               ttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgggtttggtttgtgtttgggcatggattgttttgagtgacttgtttgtttttatctttagagtgtttggaattcaattttggttggaatggtggtgtgtttagattagggtttctggctctgggttgttgcgtttttcggaggagctgagggtgatgtggttgttgatgcagCCGGTAAAACCGATTACCGTGCGAGGATTCGTTTGACTACCCAGGATAAGAACAAGTACAACACCCCGAAGTACCGTTATGTCGTGCGATTT

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