1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgtgtcactcaaattgtctcccttctcgttatgccctgtcttttgaaacttatcatattgaaaatgagattgatagcacggacatttacttctttagtgatagaggatttttccgctcatgattgcattggttttgtacttttgtggttgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTGAACAA
species | Physcomitrella patens |
transcript | PP1S386_29V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTAAAAGCG CTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTGAACAAEST: gi|162154385|gb|FC330192.1|FC330192
genomic: CGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTAAAAGCGgtacgtgtca ... gtggttgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTGAACAA
EST: CGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTAAAAGCG CTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTGAACAA
genomic: CGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTAAAAGCGgtacgtgtca ... gtggttgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTGAACAA
gatagaggatttttccgctcatgattgcattggttttgtacttttgtggttgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTGAACAA
cttttgt CT-rich tract
attttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgtcactcaaattgtctcccttctcgttatgccctgtcttttgaaacttatcatattgaaaatgagattgatagcacggacatttacttctttagtgatagaggatttttccgctcatgattgcattggttttgtacttttgtggttgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG