1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgacctcatttgaccttttctttttctttttcttgttctttctttcccttttctttcaaaatcacattgatatcgatttttgaattttgagtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATTTTTCAGCTCCACTGGATGAGGCTCTCGTTCACGTAGTGTTG
species | Physcomitrella patens |
transcript | PP1S37_83V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162222109|gb|FC397337.1|FC397337
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162153154|gb|FC329560.1|FC329560
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162196839|gb|FC373894.1|FC373894
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162189059|gb|FC365177.1|FC365177
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTTCTAAA-GCTCTAGGTGACCGCAAGGGCAEST: gi|18337884|gb|BJ169908.1|BJ169908
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTT-CTAAAAGCTCTAGGTGACCGCAAGGGCA
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162222108|gb|FC397336.1|FC397336
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162153155|gb|FC329561.1|FC329561
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCA-GGGCATAEST: gi|208361844|gb|DC950116.1|DC950116
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATA
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162208762|gb|FC384898.1|FC384898
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162208763|gb|FC384899.1|FC384899
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGEST: gi|162271019|gb|FC447424.1|FC447424
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCG
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|37838754|gb|BJ596762.1|BJ596762
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162271020|gb|FC447425.1|FC447425
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAAGCGCTTCCGAGATEST: gi|162150420|gb|FC326692.1|FC326692
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATEST: gi|162150421|gb|FC326693.1|FC326693
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGAT
EST: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACT GCGCTTCTAAAAGCTCTAG
genomic: ACATTGACGATCATCATACGAATGAGGATGTCGGCCTTGCTATGGGCACTgtatgtgttc ... gtgaattcagGCGCTTCTAAAAGCTCTAG
cccttttctttcaaaatcacattgatatcgatttttgaattttgagtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATTTTTCAGCTCCACTGGATGAGGCTCTCGTTCACGTAGTGTTG
cattgat putative branch site (score: 5)
atttttgaattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacctcatttgaccttttctttttctttttcttgttctttctttcccttttctttcaaaatcacattgatatcgatttttgaattttgagtgaattcagGCGCTTCTAAAAGCTCTAGGTGACCGCAAGGGCATAAGGCGCTTCGGAGATTTTTCAGCTCCACTGGATGAGGCTCTCGTTCACGTAGTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC