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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgagtttcttgttacttcaaagctaattgagcgctttccggaaatagctgaagggactagaagtttcttatgggtgtgagttttgctggcacttacagATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAG

Basic information

species Physcomitrella patens
transcript PP1S37_304V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208360587|gb|DC930859.1|DC930859
EST:     AGAAATTGCGACCTCTGTGGCGGCATTACTTCAACAACACTGACGGNTTG                         ATTTACGTTGTCGATTCATGTGATANAGANCGAATCGACAAGGCAGCGAGC
genomic: AGAAATTGCGACCTCTGTGGCGGCATTACTTCAACAACACTGACGGTTTGgtaaattctc ... gcacttacagATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGC
EST: gi|162172685|gb|FC348066.1|FC348066
EST:     AGAAATTGCGACCTCTGTGGCGGCATTACTTCAACAACACTGACGGTTTG                         ATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGC
genomic: AGAAATTGCGACCTCTGTGGCGGCATTACTTCAACAACACTGACGGTTTGgtaaattctc ... gcacttacagATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGC
EST: gi|18362447|gb|BJ194517.1|BJ194517
EST:     AGAAATTGCGACCTCTGTGGCGGCATTACTTCAACAACACTGACGGTTTG                         ATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGC
genomic: AGAAATTGCGACCTCTGTGGCGGCATTACTTCAACAACACTGACGGTTTGgtaaattctc ... gcacttacagATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGC
EST: gi|18365645|gb|BJ197722.1|BJ197722
EST:     AGAAATTGCGACCTCTGTGGCGGCATTACTTCAACAACACTGACGGTTTG                         ATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGC
genomic: AGAAATTGCGACCTCTGTGGCGGCATTACTTCAACAACACTGACGGTTTGgtaaattctc ... gcacttacagATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagctgaagggactagaagtttcttatgggtgtgagttttgctggcacttacagATTTACGTTGTCGATTCATGTGATAGAGAACGAATCGACAAGGCAGCGAGCGAGTTTCAG
                    tttcttat  TA-rich tract