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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattttcattgctgtctttgtgccttgaaagatgtttcttctatatgctttggctatatataccacctactctcttacactcttgatttcttgattgtagGAGTGCAAAGTTGTAGAGAAGGGAGGAGATTTTTACCGTTTCCGGCACAACACTAGATCGGTTAAATCCACCATTGTTCATTTTCAG

Basic information

species Physcomitrella patens
transcript PP1S376_49V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100404412|gb|BY973565.1|BY973565
EST:     AGTACAAGAATTACGTGAATTTGCAGTTACCGCATGATGAACTAGAGAAG                         GAGTGCAAAGTTGTAGAGAAGGGAGGAGATTTTTACCGTTTCCGGCACAAC
genomic: AGTACAAGAATTACGTGAATTTGCAGTTACCGCATGATGAACTAGAGAAGgtgaatggtc ... ttgattgtagGAGTGCAAAGTTGTAGAGAAGGGAGGAGATTTTTACCGTTTCCGGCACAAC
EST: gi|162249446|gb|FC424051.1|FC424051
EST:     AGTACAAGAATTACGTGAATTTGCAGTTACCGCATGATGAACTAGAGAAG                         GAGTGCAAAGTTGTAGAGAAGGGAGGAGATTTTTACCGTTTCCGGCACAAC
genomic: AGTACAAGAATTACGTGAATTTGCAGTTACCGCATGATGAACTAGAGAAGgtgaatggtc ... ttgattgtagGAGTGCAAAGTTGTAGAGAAGGGAGGAGATTTTTACCGTTTCCGGCACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttggctatatataccacctactctcttacactcttgatttcttgattgtagGAGTGCAAAGTTGTAGAGAAGGGAGGAGATTTTTACCGTTTCCGGCACAACACTAGATCGGTTAAATCCACCATTGTTCATTTTCAG
                                         tttctt  CT-rich tract
         tatatata  TA-rich tract