1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctctctgtagaacaagggaatactcctttttttgtgtttgtgtgtgtaggttttattgctatttttctatctaaggaggatattatggtatctcttacagGAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTAGTGACAGGAAAGAAGCCTGTGAAGGACAAGCCTGCTGTTAATAATTCCTCT
species | Physcomitrella patens |
transcript | PP1S371_53V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCGCTGTTGCTTTTTATTATGGTGCCCGGTTTGACAAGAACGAGAG GAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTAGTEST: gi|162221663|gb|FC397888.1|FC397888
genomic: CTGCTCGCTGTTGCTTTTTATTATGGTGCCCGGTTTGACAAGAACGAGAGgtcagctatc ... tctcttacagGAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTAGT
EST: CTGCTCGCTGTTGCTTTTTATTATGGTGCCCGGTTTGACAAGAACGAGAG GAAGCGTCTCTTTGATATGATAAATGAACTCCCAACAGTATTCGACGTAGTEST: gi|67570731|gb|BJ943555.1|BJ943555
genomic: CTGCTCGCTGTTGCTTTTTATTATGGTGCCCGGTTTGACAAGAACGAGAGgtcagctatc ... tctcttacagGAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTAGT
EST: CTGCTCGCTGTTGCTTTTTATTATGGTGCCCGGTTTGACAAGAACGAGAG GAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTAGTEST: gi|100448621|gb|CJ972920.1|CJ972920
genomic: CTGCTCGCTGTTGCTTTTTATTATGGTGCCCGGTTTGACAAGAACGAGAGgtcagctatc ... tctcttacagGAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTAGT
EST: CTGCTCGCTGTTGCTTTTTATTATGGTGCCCGGTTTGACAAGAACGAGAG GAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCNACGTA
genomic: CTGCTCGCTGTTGCTTTTTATTATGGTGCCCGGTTTGACAAGAACGAGAGgtcagctatc ... tctcttacagGAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTA
gtaggttttattgctatttttctatctaaggaggatattatggtatctcttacagGAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTAGTGACAGGAAAGAAGCCTGTGAAGGACAAGCCTGCTGTTAATAATTCCTCT
tatctctt CT-rich tract
ttttattgctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctctgtagaacaagggaatactcctttttttgtgtttgtgtgtgtaggttttattgctatttttctatctaaggaggatattatggtatctcttacagGAAGCGTCTCTTTAATATGATAAATGAACTCCCAACAGTATTCGACGTAGTGACAGGAAAGAAGCCTGTGAAGGACAAGCCTGCTGTTAATAATTCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT