1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catgtacgaatcacatacctgaaacgccaagtttcggagaggatgaatttttcttgtttttatctctaatgtctgtgctatgtccacttccctgctgaagCATTCTCAGCTACAGTATCCCCTGCCGTCCTCTCTTGGGCCCTACAATGGTGGGATTCCAGCGGCAGGATCTTCCTCAGAGCCAAGCGCTCCTCCTCCTT
species | Physcomitrella patens |
transcript | PP1S35_182V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTACACCAACCGACAGATCCTGCAATCATATCACTTCAGGGTACCG CATTCTCAGCTACAGTATCCCCTGCCGTCCTCTCTTGGGCCEST: gi|100445130|gb|BY964429.1|BY964429
genomic: TCCTCTACACCAACCGACAGATCCTGCAATCATATCACTTCAGG-TACCGgtacgttgtc ... cctgctgaagCATTCTCAGCTACAGTATCCCCTGCCGTCCTCTCTTGGGCC
EST: CTCCTCTACACCAACCGACAGATCCTGCAATCATATCACTTCAG---C-- -ATTCTCAGCTACAGTATCCCCTGCCGTCCTCTCTTGGGCCCTACAATGGT
genomic: CTCCTCTACACCAACCGACAGATCCTGCAATCATATCACTTCAGGTACCGgtacgttgtc ... cctgctgaagCATTCTCAGCTACAGTATCCCCTGCCGTCCTCTCTTGGGCCCTACAATGGT
aatttttcttgtttttatctctaatgtctgtgctatgtccacttccctgctgaagCATTCTCAGCTACAGTATCCCCTGCCGTCCTCTCTTGGGCCCTACAATGGTGGGATTCCAGCGGCAGGATCTTCCTCAGAGCCAAGCGCTCCTCCTCCTT
ctctaat putative branch site (score: 15)
tccacttccctgct putative PPT
tttttatctctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtacgaatcacatacctgaaacgccaagtttcggagaggatgaatttttcttgtttttatctctaatgtctgtgctatgtccacttccctgctgaagCATTCTCAGCTACAGTATCCCCTGCCGTCCTCTCTTGGGCCCTACAATGGTGGGATTCCAGCGGCAGGATCTTCCTCAGAGCCAAGCGCTCCTCCTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC