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...ggaagtcattttccaacaacctgaatgcatatcttgcgagttaaattataacagaattctcctagttctttttagaattccttaacccaaaagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG
species | Physcomitrella patens |
transcript | PP1S34_430V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|100429526|gb|BY959607.1|BY959607
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|22492619|gb|BU052542.1|BU052542
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|100437122|gb|BY961362.1|BY961362
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|100418156|gb|BY993361.1|BY993361
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|100422700|gb|BY957957.1|BY957957
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|100440809|gb|BY980629.1|BY980629
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|208377833|gb|DC940945.1|DC940945
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|100424688|gb|BY976765.1|BY976765
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGEST: gi|100440735|gb|BY980555.1|BY980555
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
EST: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATT ACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
genomic: GGCATTGTTTGACAGGCTTGATGCCGTGGATGCAGATAAAATTGCAAATTgtatcctgaa ... aagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGG
ttataacagaattctcctagttctttttagaattccttaacccaaaagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG
ttccttaac putative branch site
ttctttttagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaagtcattttccaacaacctgaatgcatatcttgcgagttaaattataacagaattctcctagttctttttagaattccttaacccaaaagagtgcagACATTGCAGGACTACAGAATGAGGACGGATCCTTTTCTGGCGATGGATGGGGGGAGATCGACACCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC