Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcactctttcaacttgaccaatttatcggcatgaggcccttgtgatctattcctggagaacttatgagttcgattgattttataagtgcgaaatgggcaccaacattctttttcttgtttatagGAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAG

Basic information

species Physcomitrella patens
transcript PP1S34_228V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18333417|gb|BJ165432.1|BJ165432
EST:     AAGTTTAAGGGTGAAGTACAAAGTTCACAG                         GAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
genomic: AAGTTTAAGGGTGAAGTACAAAGTTCACAGgtatcactct ... ttgtttatagGAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
EST: gi|208386160|gb|DC949071.1|DC949071
EST:     TGGCCGAAGCAGCTTTGTCGAAGTTTAAGGGTGAAGTACAAAGTTCACAG                         GAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
genomic: TGGCCGAAGCAGCTTTGTCGAAGTTTAAGGGTGAAGTACAAAGTTCACAGgtatcactct ... ttgtttatagGAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
EST: gi|208353536|gb|DC918508.1|DC918508
EST:     TGGCCGAAGCAGCTTTGTCGAAGTTTAAGGGTGAAGTACAAAGTTCACAG                         GAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
genomic: TGGCCGAAGCAGCTTTGTCGAAGTTTAAGGGTGAAGTACAAAGTTCACAGgtatcactct ... ttgtttatagGAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
EST: gi|18335675|gb|BJ167695.1|BJ167695
EST:     AGTTTAAGGGTGAAGTACAAAGTTCACAG                         GAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
genomic: AGTTTAAGGGTGAAGTACAAAGTTCACAGgtatcactct ... ttgtttatagGAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
EST: gi|208356048|gb|DC957292.1|DC957292
EST:     TGGCCGAAGCAGCTTTGTCGAAGTTTAAGGGTGAAGTACAAAGTTCACAG                         GAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT
genomic: TGGCCGAAGCAGCTTTGTCGAAGTTTAAGGGTGAAGTACAAAGTTCACAGgtatcactct ... ttgtttatagGAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgattgattttataagtgcgaaatgggcaccaacattctttttcttgtttatagGAGCATCACTTTGCAACATTGCAGCGAGAAACAGAAAGGCTTCGAACTGATATTGACAAAATGCGAAGCGAACTTAG
  gattgat  putative branch site (score: 4)
                                  cattctttttcttgtt  putative PPT
                                       tttttcttgtttata  TA-rich tract