Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgatgcacaggatgacatggtgtgcagttggggacggagtgagtttgtggagatggatagatatgtggcgcaggctgggtagaaagtcggcgttggacgtcgaggcagggagtgacgtatgtgtgttgtgcgcgggggttgcgaggagatctgaaatgtgaggtgcgatgtatgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGACTGGGGCTGGCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACT

Basic information

species Physcomitrella patens
transcript PP1S348_15V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827533|gb|BJ585545.1|BJ585545
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208390694|gb|DC937850.1|DC937850
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162269401|gb|FC445269.1|FC445269
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162241149|gb|FC417768.1|FC417768
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67725735|gb|BJ975994.1|BJ975994
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208385562|gb|DC937107.1|DC937107
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67727562|gb|BJ977821.1|BJ977821
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162207491|gb|FC383736.1|FC383736
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162241150|gb|FC417769.1|FC417769
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67726117|gb|BJ976376.1|BJ976376
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67726885|gb|BJ977144.1|BJ977144
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162270401|gb|FC447101.1|FC447101
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67718418|gb|BJ968677.1|BJ968677
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|37840320|gb|BJ598328.1|BJ598328
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208370697|gb|DC936157.1|DC936157
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67719261|gb|BJ969520.1|BJ969520
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67725283|gb|BJ975542.1|BJ975542
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208345060|gb|DC925641.1|DC925641
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208362548|gb|DC943747.1|DC943747
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67716763|gb|BJ967023.1|BJ967023
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208358628|gb|DC949963.1|DC949963
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|18341253|gb|BJ173287.1|BJ173287
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         NCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162249893|gb|FC425694.1|FC425694
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67726399|gb|BJ976658.1|BJ976658
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|100373556|gb|BY948980.1|BY948980
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|37852754|gb|BJ610762.1|BJ610762
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208387877|gb|DC929221.1|DC929221
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162269402|gb|FC445270.1|FC445270
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|37830224|gb|BJ588236.1|BJ588236
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162270400|gb|FC447100.1|FC447100
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|67691435|gb|BJ951668.1|BJ951668
EST:     AGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: AGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208365445|gb|DC950912.1|DC950912
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|18339751|gb|BJ171778.1|BJ171778
EST:     ATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: ATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|18338400|gb|BJ170424.1|BJ170424
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         NCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|37846290|gb|BJ604298.1|BJ604298
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|162207492|gb|FC383737.1|FC383737
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
EST: gi|208354137|gb|DC957385.1|DC957385
EST:     CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAG                         GCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA
genomic: CCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 18

GAAGGGTGATTACTATCGGTATTTGGCGGAGTTCAAGACCGGGAATGAGAGAAAAGAAGCCGCCGACCAATCTTTGAAGGCGTACCAGgtgcgatgca ... atgtgcgcagGCCGCGTCGAACACAGCTACGACGGATTTGGCGCCCACGCATCCGATCCGACTGGGGCTGGCGTTGAATTTTTCGGTGTTTTATTACGAGATTTTGAACT




<











<


<