1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatcccgtgtcacttgggatacgtcaacccattagatactaggtcttggtggtttctaagagtttctcactgtacccgaactgcttctcggaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCAGGTGTGAAGGTCTCAGTGCGTCAGCTCGGCCCTGGTATGATACAGCAG
species | Physcomitrella patens |
transcript | PP1S342_16V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|100401219|gb|BY990892.1|BY990892
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGGTGTCAAGGTTCEST: gi|100414304|gb|BY992711.1|BY992711
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|19778134|gb|BQ039262.1|BQ039262
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|162174909|gb|FC351701.1|FC351701
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCANAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCANAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|162189947|gb|FC365611.1|FC365611
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|162242594|gb|FC414985.1|FC414985
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|162195909|gb|FC375642.1|FC375642
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|100357768|gb|BY946564.1|BY946564
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|162152418|gb|FC327981.1|FC327981
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|100409753|gb|BY956088.1|BY956088
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|100415464|gb|BY992856.1|BY992856
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCANAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GGAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCA-GGTTTEST: gi|162157608|gb|FC332930.1|FC332930
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTT-
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|162185740|gb|FC362088.1|FC362088
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|100448738|gb|CJ973037.1|CJ973037
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|162254102|gb|FC429626.1|FC429626
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCEST: gi|162162054|gb|FC338845.1|FC338845
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
EST: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGG GAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
genomic: TCAAAGAAACTGTCATTGTCGAGGAACATTATTTGCTCAAAGTGCAAAGGgtaaagctcg ... gaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTC
ttggtggtttctaagagtttctcactgtacccgaactgcttctcggaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCAGGTGTGAAGGTCTCAGTGCGTCAGCTCGGCCCTGGTATGATACAGCAG
ttctcac putative branch site (score: 70)
tttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcccgtgtcacttgggatacgtcaacccattagatactaggtcttggtggtttctaagagtttctcactgtacccgaactgcttctcggaatttgcagGAAAGGTTCCAAATCCGGTGCATCCAGTCGGTGTGCAGGATGTCAAGGTTCAGGTGTGAAGGTCTCAGTGCGTCAGCTCGGCCCTGGTATGATACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC