1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgatatatgtgaatggcaggcaggtgctctcattgtgattaaaaacgtagagcaccttgatgaggtcctccaaatttttgtgtagaggccttatcatgtcagtcaataatgctctctcttttgtaacattctgcccagTGGACGCATGGGGAAGCAAGGGCGGACAATTGCTAGTCAACATAACTACATTGCTAACATTGGAAGGCCGGCGAAACCGAGGATGCTCGGAATAACAGAG
species | Physcomitrella patens |
transcript | PP1S33_245V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTAGCTGAAAGCCGTAGCCGAAGTTGTACGAGATGGAAGAGTTTTTAAG TGGACGCATGGGGAAGCAAGGGCGGACAATTGCTAGTCAACATAACTACATEST: gi|162253723|gb|FC429837.1|FC429837
genomic: GGTAGCTGAAAGCCGTAGCCGAAGTTGTACGAGATGGAAGAGTTTTTAAGgtaagtgata ... ttctgcccagTGGACGCATGGGGAAGCAAGGGCGGACAATTGCTAGTCAACATAACTACAT
EST: GGTAGCTGAAAGCCGTAGCCGAAGTTGTACGAGATGGAAGAGTTTTTAAG TGGACGCATGGGGAAGCAAGGGCGGACAATTGCTAGTCAACATAACTACAT
genomic: GGTAGCTGAAAGCCGTAGCCGAAGTTGTACGAGATGGAAGAGTTTTTAAGgtaagtgata ... ttctgcccagTGGACGCATGGGGAAGCAAGGGCGGACAATTGCTAGTCAACATAACTACAT
agaggccttatcatgtcagtcaataatgctctctcttttgtaacattctgcccagTGGACGCATGGGGAAGCAAGGGCGGACAATTGCTAGTCAACATAACTACATTGCTAACATTGGAAGGCCGGCGAAACCGAGGATGCTCGGAATAACAGAG
ttgtaac putative branch site (score: 12)
ttctgccc CT-rich tract
tcaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgatatatgtgaatggcaggcaggtgctctcattgtgattaaaaacgtagagcaccttgatgaggtcctccaaatttttgtgtagaggccttatcatgtcagtcaataatgctctctcttttgtaacattctgcccagTGGACGCATGGGGAAGCAAGGGCGGACAATTGCTAGTCAACATAACTACATTGCTAACATTGGAAGGCCGGCGAAACCGAGGATGCTCGGAATAACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG