1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gatatttgcttgtctatgtgtcaatagtagtaagtacattattttctttttccatataagatacagacatcagcgatcactgatatatggaagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGAAGGCGCTTGATGAGCTGTCAAAGT
species | Physcomitrella patens |
transcript | PP1S332_45V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGEST: gi|18342127|gb|BJ174162.1|BJ174162
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGEST: gi|67718772|gb|BJ969031.1|BJ969031
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGEST: gi|100452661|gb|CJ975381.1|CJ975381
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGEST: gi|67712849|gb|BJ966298.1|BJ966298
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGEST: gi|162156991|gb|FC333353.1|FC333353
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGEST: gi|100391079|gb|BY953089.1|BY953089
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGEST: gi|100388050|gb|BY988523.1|BY988523
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGEST: gi|18373032|gb|BJ204634.1|BJ204634
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
EST: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCT ACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
genomic: AGCCTGGGGATCCCGAATATGCCCCTCCTGTTACGAAGGGGGAAACTCCTgtaagatttc ... aagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAG
ctttttccatataagatacagacatcagcgatcactgatatatggaagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGAAGGCGCTTGATGAGCTGTCAAAGT
cactgat putative branch site (score: 11)
atataagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatttgcttgtctatgtgtcaatagtagtaagtacattattttctttttccatataagatacagacatcagcgatcactgatatatggaagtgaacagACACAAAGACGCGCTCGAATTCATCAACTCCGTTTGGAGGAAGGAGCTAAGAAGGCGCTTGATGAGCTGTCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG