1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caggagatgagtgctgaagataaacaatcatgttttcgagtcttggcattgcatctacgctttaaggttattgacgaggaatgtgggcccagtcatgcagTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG
species | Physcomitrella patens |
transcript | PP1S332_23V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAG TCATGCAGTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGAEST: gi|100360347|gb|BY966126.1|BY966126
genomic: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAGgtttactaat ... agtcatgcagT--T-CAGTT--G--G-AAAGACGAGATGTACAAGCAAGAAGTCTGTGGGA
EST: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAG TTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAEST: gi|162219572|gb|FC395568.1|FC395568
genomic: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAGgtttactaat ... agtcatgcagTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTA
EST: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAG TTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAEST: gi|18350788|gb|BJ182839.1|BJ182839
genomic: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAGgtttactaat ... agtcatgcagTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTA
EST: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAG TTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATEST: gi|208381568|gb|DC923154.1|DC923154
genomic: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAGgtttactaat ... agtcatgcagTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGAT
EST: AAATGACTCTCCTATGTCAG TTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAEST: gi|18359944|gb|BJ192005.1|BJ192005
genomic: AAATGACTCTCCTATGTCAGgtttactaat ... agtcatgcagTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTA
EST: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAG TCATGCAGTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGA
genomic: GATTCTTACAGCGAGTTATAAATTTCCCAGAAATGACTCTCCTATGTCAGgtttactaat ... agtcatgcagT--T-CAGTT--G--G-AAAGACGAGATGTACAAGCAAGAAGTCTGTGGGA
gcattgcatctacgctttaaggttattgacgaggaatgtgggcccagtcatgcagTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG
tattgac putative branch site (score: 23)
ttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggagatgagtgctgaagataaacaatcatgttttcgagtcttggcattgcatctacgctttaaggttattgacgaggaatgtgggcccagtcatgcagTTCAGTTGGAAAGACGAGATGTACAAGCAAGAAGTCTGTGGGATTCCATTAGATCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - -tgctgaa