1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttggcaaacatttgtcatgctacatctcgaaagtagtcattgcattatgttgcgttgaatagtttcagaagtgaacgacaccatgttgaatccggtgcagGGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGTCCTTTCGGTGCCGATGGCAAGCTCTACGCCAACGATCTTGCCAACCTTATTGAAT
species | Physcomitrella patens |
transcript | PP1S32_198V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTACCATGGGTCTCACAGCGCACAGCACCTGGAAATACAACGTGGCCCAG GGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGGCCTTTCEST: gi|162234390|gb|FC410136.1|FC410136
genomic: CTACCATGGGTCTCACAGCGCACAGCACCTGGAAATACAACGTGGCCCAGgtaggttcgc ... tccggtgcagGGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGTCCTTTC
EST: CTACCATGGGTCTCACAGCGCACAGCACCTGGAAATACAACGTGGCCCAG GGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGGCCTTTCEST: gi|100410528|gb|BY992147.1|BY992147
genomic: CTACCATGGGTCTCACAGCGCACAGCACCTGGAAATACAACGTGGCCCAGgtaggttcgc ... tccggtgcagGGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGTCCTTTC
EST: CTACCATGGGTCTCACAGCGCACAGCACCTGGAAATACAACGTGGCCCAG GGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGTCCTTTC
genomic: CTACCATGGGTCTCACAGCGCACAGCACCTGGAAATACAACGTGGCCCAGgtaggttcgc ... tccggtgcagGGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGTCCTTTC
tatgttgcgttgaatagtttcagaagtgaacgacaccatgttgaatccggtgcagGGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGTCCTTTCGGTGCCGATGGCAAGCTCTACGCCAACGATCTTGCCAACCTTATTGAAT
aatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggcaaacatttgtcatgctacatctcgaaagtagtcattgcattatgttgcgttgaatagtttcagaagtgaacgacaccatgttgaatccggtgcagGGCTTTGGAGTACACCATGTAATGAACCCCGACCCTTATAGAGGTCCTTTCGGTGCCGATGGCAAGCTCTACGCCAACGATCTTGCCAACCTTATTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - -tgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa