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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgggaacatgcattttgtccttcgacgatttgcggttggggtgtgcaagtgatttctctcgtgtctaattcagttttcttaactctctatttcaatgttcaaatcacttgcttggatgtggagcaggctttcacagaacttctaatgtgttggagactaacagacgagtccactgtggtgtatcagGAAATATTCTGAGAGGGAAGATCATGCCCGGTTTGTACAGAGCCGCAGTATTGATGGCAAGGATTTCGATTATCACGCAG

Basic information

species Physcomitrella patens
transcript PP1S31_251V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162209786|gb|FC385720.1|FC385720
EST:     GCCCGTGTGCTTGTCAAGCCCTATAGAGAAAAAGGCAAACACGGTGACAG                         GAAATATTCTGAGAGGGAAGATCATGCCCGGTTTGTACAGAGCCGCAGTAT
genomic: GCCCGTGTGCTTGTCAAGCCCTATAGAGAAAAAGGCAAACACGGTGACAGgtaatgggaa ... ggtgtatcagGAAATATTCTGAGAGGGAAGATCATGCCCGGTTTGTACAGAGCCGCAGTAT
EST: gi|162242461|gb|FC418960.1|FC418960
EST:     GCCCGTGTGCTTGTCAAGCCCTATAGAGAAAAAGGCAAACACGGTGACAG                         GAAATATTCTGAGAGGGAAGATCATGCCCGGTTTGTACAGAGCCGCAGTAT
genomic: GCCCGTGTGCTTGTCAAGCCCTATAGAGAAAAAGGCAAACACGGTGACAGgtaatgggaa ... ggtgtatcagGAAATATTCTGAGAGGGAAGATCATGCCCGGTTTGTACAGAGCCGCAGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacagaacttctaatgtgttggagactaacagacgagtccactgtggtgtatcagGAAATATTCTGAGAGGGAAGATCATGCCCGGTTTGTACAGAGCCGCAGTATTGATGGCAAGGATTTCGATTATCACGCAG
                       gactaac  putative branch site (score: 1)
        ttctaat  TA-rich tract