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gtacgttttgccccgtcggagttcagatttgcctttgaattcaccgaacttctcttgagtagtacatgttttcaatgactaggtttcttgcggtgtgtgtgtgtgtgtctgcatatataggatgacgctattattccctccccatgttctactgctgaacacgtgattgcgtgtacagTTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGAACTTTGTTGCCATTATGCTTTTTGGAGTAATTGGAGTTTTTATCTCTGTTGCTATTATTACAGCGG
species | Physcomitrella patens |
transcript | PP1S31_203V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGCTGTTTTTTATATATTTACTACCTCCTATTATTTTCAATGCTGG TTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGAACTTTGTTGCCATTATGCTEST: gi|100442401|gb|BY981425.1|BY981425
genomic: GAGGAGCTGTTTTTTATATATTTACTACCTCCTATTATTTTCAATGCTGGgtacgttttg ... gcgtgtacagTTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGAACTTTGTTGCCATTATGCT
EST: GAGGAGCTGTTTTTTATATATTTACTACCTCCTATTATTTTCAATGCTGG TTTCCAGGTCAAGAAGAAGTCGTTCTTCCEST: gi|100441956|gb|BY981179.1|BY981179
genomic: GAGGAGCTGTTTTTTATATATTTACTACCTCCTATTATTTTCAATGCTGGgtacgttttg ... gcgtgtacagTTTCCAGGTCAAGAAGAAGTCGTTCTTCC
EST: GAGGAGCTGTTTTTTATATATTTACTACCTCCTATTATTTTCAATGCTGG TTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGA-CTTTTGTTGCCEST: gi|162257367|gb|FC433450.1|FC433450
genomic: GAGGAGCTGTTTTTTATATATTTACTACCTCCTATTATTTTCAATGCTGGgtacgttttg ... gcgtgtacagTTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGAACTTT-GTTGCC
EST: GAGGAGCTGTTTTTTATATATTTACTACCTCCTATTATTTTCAATGCTGG TTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGAACTTTGTTGCCATTATGCT
genomic: GAGGAGCTGTTTTTTATATATTTACTACCTCCTATTATTTTCAATGCTGGgtacgttttg ... gcgtgtacagTTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGAACTTTGTTGCCATTATGCT
gacgctattattccctccccatgttctactgctgaacacgtgattgcgtgtacagTTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGAACTTTGTTGCCATTATGCTTTTTGGAGTAATTGGAGTTTTTATCTCTGTTGCTATTATTACAGCGG
tattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttttgccccgtcggagttcagatttgcctttgaattcaccgaacttctcttgagtagtacatgttttcaatgactaggtttcttgcggtgtgtgtgtgtgtgtctgcatatataggatgacgctattattccctccccatgttctactgctgaacacgtgattgcgtgtacagTTTCCAGGTCAAGAAGAAGTCGTTCTTCCGGAACTTTGTTGCCATTATGCTTTTTGGAGTAATTGGAGTTTTTATCTCTGTTGCTATTATTACAGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG