1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAAGTCCGTGAGAGGCTGCATCGTTAGTCCCGATCTGTCAGTACTGAATCT
species | Physcomitrella patens |
transcript | PP1S311_33V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|67698486|gb|BJ958719.1|BJ958719
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|208350926|gb|DC910473.1|DC910473
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCANACGCAEST: gi|162279665|gb|FC455898.1|FC455898
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18374415|gb|BJ205993.1|BJ205993
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18340116|gb|BJ172144.1|BJ172144
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|208394580|gb|DC953619.1|DC953619
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162220470|gb|FC396007.1|FC396007
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162236276|gb|FC411200.1|FC411200
genomic: GTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|19785812|gb|BQ040399.1|BQ040399
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|37831873|gb|BJ589885.1|BJ589885
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162245101|gb|FC422927.1|FC422927
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18373396|gb|BJ204974.1|BJ204974
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|67575041|gb|BJ947865.1|BJ947865
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|37844063|gb|BJ602071.1|BJ602071
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|208359876|gb|DC934877.1|DC934877
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|208396632|gb|DC924300.1|DC924300
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|208377690|gb|DC932226.1|DC932226
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162239498|gb|FC417963.1|FC417963
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18373564|gb|BJ205142.1|BJ205142
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162220469|gb|FC396006.1|FC396006
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162271070|gb|FC446097.1|FC446097
genomic: GCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|37844985|gb|BJ602993.1|BJ602993
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|67571348|gb|BJ944172.1|BJ944172
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18367978|gb|BJ200062.1|BJ200062
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162271071|gb|FC446098.1|FC446098
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18355513|gb|BJ187572.1|BJ187572
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162235066|gb|FC411201.1|FC411201
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|37832457|gb|BJ590469.1|BJ590469
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18342104|gb|BJ174139.1|BJ174139
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162206668|gb|FC382426.1|FC382426
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|67694668|gb|BJ954901.1|BJ954901
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|208386094|gb|DC949005.1|DC949005
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18371929|gb|BJ203531.1|BJ203531
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|67698381|gb|BJ958614.1|BJ958614
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|37821180|gb|BJ579246.1|BJ579246
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162279666|gb|FC455899.1|FC455899
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|67574954|gb|BJ947778.1|BJ947778
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162239497|gb|FC417962.1|FC417962
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|162245074|gb|FC422926.1|FC422926
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAEST: gi|18352184|gb|BJ184238.1|BJ184238
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
EST: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG GTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
genomic: GAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgtt ... tcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCA
attttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAAGTCCGTGAGAGGCTGCATCGTTAGTCCCGATCTGTCAGTACTGAATCT
tcttgat putative branch site (score: 45)
tttttgttcttct putative PPT
taaagtaatgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacgttaaccacctgccgcttcctcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaagGTGTTTCATGCTTCCGAGGATACGGACGACGCAATGGAGAACGCAGACGCAAGTCCGTGAGAGGCTGCATCGTTAGTCCCGATCTGTCAGTACTGAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG