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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccgagtcgtttcctggaagacaaattcagactaggtttgatcaagttgatgtggactcatgtgaatagtacacacccttttaccatgtaattcatggatttaatcttgattcgcgaggggcgaactctgatattgatcccagaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA

Basic information

species Physcomitrella patens
transcript PP1S309_84V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100416916|gb|BY993152.1|BY993152
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18364854|gb|BJ196927.1|BJ196927
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67712630|gb|BJ966079.1|BJ966079
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18364847|gb|BJ196920.1|BJ196920
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18367853|gb|BJ199936.1|BJ199936
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18357408|gb|BJ189467.1|BJ189467
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18331326|gb|BJ163336.1|BJ163336
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208361278|gb|DC930864.1|DC930864
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208353409|gb|DC938686.1|DC938686
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67709777|gb|BJ965593.1|BJ965593
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100418832|gb|BY975761.1|BY975761
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208370793|gb|DC936197.1|DC936197
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18356323|gb|BJ188382.1|BJ188382
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100391292|gb|BY971583.1|BY971583
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18345809|gb|BJ177852.1|BJ177852
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67702657|gb|BJ962890.1|BJ962890
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67704163|gb|BJ964396.1|BJ964396
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208389928|gb|DC937759.1|DC937759
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18359051|gb|BJ191111.1|BJ191111
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208393363|gb|DC942475.1|DC942475
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18353233|gb|BJ185288.1|BJ185288
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67716800|gb|BJ967059.1|BJ967059
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67702193|gb|BJ962426.1|BJ962426
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCCACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18351302|gb|BJ183354.1|BJ183354
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100370194|gb|BY985289.1|BY985289
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100407403|gb|BY991684.1|BY991684
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18374342|gb|BJ205920.1|BJ205920
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100450224|gb|CJ974156.1|CJ974156
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100390873|gb|BY989356.1|BY989356
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67719585|gb|BJ969844.1|BJ969844
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|162271003|gb|FC447408.1|FC447408
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18352108|gb|BJ184162.1|BJ184162
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208357982|gb|DC943080.1|DC943080
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100388397|gb|BY951999.1|BY951999
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100409472|gb|BY992028.1|BY992028
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18362200|gb|BJ194270.1|BJ194270
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208389902|gb|DC937733.1|DC937733
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18367755|gb|BJ199838.1|BJ199838
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18371268|gb|BJ202870.1|BJ202870
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100408961|gb|BY974303.1|BY974303
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208389487|gb|DC942194.1|DC942194
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67717293|gb|BJ967552.1|BJ967552
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208389270|gb|DC933298.1|DC933298
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67709719|gb|BJ965535.1|BJ965535
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18325917|gb|BJ157916.1|BJ157916
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67701666|gb|BJ961899.1|BJ961899
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208367329|gb|DC939859.1|DC939859
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67710128|gb|BJ965863.1|BJ965863
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208366788|gb|DC940102.1|DC940102
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100435098|gb|BY979071.1|BY979071
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18348603|gb|BJ180652.1|BJ180652
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67717669|gb|BJ967928.1|BJ967928
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18342424|gb|BJ174459.1|BJ174459
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208387109|gb|DC941281.1|DC941281
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100388056|gb|BY988529.1|BY988529
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100410315|gb|BY992045.1|BY992045
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67573346|gb|BJ946170.1|BJ946170
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67709425|gb|BJ965241.1|BJ965241
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCAATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208375286|gb|DC940439.1|DC940439
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|67717837|gb|BJ968096.1|BJ968096
EST:     TTCGCAGGATCCATCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|100424875|gb|BY976860.1|BY976860
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|18327000|gb|BJ159001.1|BJ159001
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
EST: gi|208394373|gb|DC942533.1|DC942533
EST:     TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAG                         GTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT
genomic: TTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 13

GTATGTGCCCAAAAGAAGAATGTGAGCTTCTCCGCCGAAGACTCTTTCGCAGGATCCGTCAAGAGTTTGAGGGTGGCTGCATCTCCCGTTTCCAGgtgccgagtc ... agaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttaatcttgattcgcgaggggcgaactctgatattgatcccagaaatgcagGTCGATTAGCAGGTCTTTCACAGTGAGAGCGACTGCTACCGAATTTCCCGTGAGAACAACAA
                                   tattgat  putative branch site (score: 13)
                                  atattgat  TA-rich tract