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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaatacgttgatcgagtcgcgctgaaaccaactgaactagttgaaagctgtgcatcttcatatacttggttttaatagctcattatcccccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGA

Basic information

species Physcomitrella patens
transcript PP1S309_73V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162180712|gb|FC357797.1|FC357797
EST:     TTCATGGGTTCATTGAAGGGTTTGAAGCTGTCAGCTGCCCCCGTTCGCCG                         GTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
genomic: TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCGgtaggatttc ... cccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
EST: gi|208362133|gb|DC943532.1|DC943532
EST:     TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCG                         GTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
genomic: TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCGgtaggatttc ... cccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
EST: gi|162156177|gb|FC332552.1|FC332552
EST:     TTCATGGGTTCATTGAAGGGTTTGAAGCTGTCAGCTGCCCCCGTTCGCCG                         GTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
genomic: TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCGgtaggatttc ... cccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
EST: gi|18328635|gb|BJ160640.1|BJ160640
EST:     TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCG                         GTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
genomic: TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCGgtaggatttc ... cccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
EST: gi|162268832|gb|FC445680.1|FC445680
EST:     TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCG                         GTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
genomic: TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCGgtaggatttc ... cccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
EST: gi|18330269|gb|BJ162275.1|BJ162275
EST:     TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCG                         GTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
genomic: TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCGgtaggatttc ... cccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC
EST: gi|67701881|gb|BJ962114.1|BJ962114
EST:     TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCG                         GTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCTCAC
genomic: TTCATGGGTTCATTGAAGGGCTTGAAGCTGTCAGCTGCCCCCGTTCGCCGgtaggatttc ... cccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagctgtgcatcttcatatacttggttttaatagctcattatcccccaacgcagGTTGGCGCAGAGATGCAGTACAACGAGGGCCACAGCGACTGAGTTCCCCACTAAGACTACGA
                          ttttaat  putative branch site (score: 3)
                                       ttatccccc  putative PPT
                          ttttaata  TA-rich tract