1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagttaactatgtttttttaaatcccttttctgtgtggaatgtgcatctcgtgctttatcttaaatcccgttagtcgatcatacaaatcgagtcttgttgatatggttatatattcagtaaaatattattctcatattcaagggttcgttcttcatgttcgaacagAGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGGGAGAACGCGTGGTGGCGTTCGGAGCAGCAGTTCTGTCTCGACCTTCACC
species | Physcomitrella patens |
transcript | PP1S307_58V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGCAGCGTTTTACAATGCTCTTACGGATGTGCTGTGGCATTTTGGTCAG AGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGGEST: gi|162256891|gb|FC432993.1|FC432993
genomic: GAGCAGCGTTTTACAATGCTCTTACGGATGTGCTGTGGCATTTTGGTCAGgttagttaac ... gttcgaacagAGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGG
EST: GAGCAGCGTTTTACAATGCTCTTACGGATGTGCTGTGGCATTTTGGTCAG AGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGGEST: gi|162169145|gb|FC346035.1|FC346035
genomic: GAGCAGCGTTTTACAATGCTCTTACGGATGTGCTGTGGCATTTTGGTCAGgttagttaac ... gttcgaacagAGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGG
EST: GAGCAGCGTTTTACAATGCTCTTACGGATGTGCTGTGGCATTTTGGTCAG AGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGGEST: gi|162214317|gb|FC390036.1|FC390036
genomic: GAGCAGCGTTTTACAATGCTCTTACGGATGTGCTGTGGCATTTTGGTCAGgttagttaac ... gttcgaacagAGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGG
EST: GAGCAGCGTTTTACAATGCTCTTACGGATGTGCTGTGGCATTTTGGTCAG AGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGA
genomic: GAGCAGCGTTTTACAATGCTCTTACGGATGTGCTGTGGCATTTTGGTCAGgttagttaac ... gttcgaacagAGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGA
tattcagtaaaatattattctcatattcaagggttcgttcttcatgttcgaacagAGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGGGAGAACGCGTGGTGGCGTTCGGAGCAGCAGTTCTGTCTCGACCTTCACC
taaaatattattctca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttaactatgtttttttaaatcccttttctgtgtggaatgtgcatctcgtgctttatcttaaatcccgttagtcgatcatacaaatcgagtcttgttgatatggttatatattcagtaaaatattattctcatattcaagggttcgttcttcatgttcgaacagAGACAGGGAGCTCAAGAAGTAGTTGTTGCTGCGAAGCGACGACAAGTGTGGGAGAACGCGTGGTGGCGTTCGGAGCAGCAGTTCTGTCTCGACCTTCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG